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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0257200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.31 (0.0455) R2 : 0.613
β1 : 0.358 (0.178) R2dD : 0.00563 R2D : 0.0104
β2 : 2.16 (0.101) R2dC : 0.394 R2C : 0.447
β3 : -2.69 (0.256) R2dE : 0.223 R2E : 0.142
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.22 (0.675) R2dD*E : 0.0775 R2D*E : -0.116
γ1 : 7.72e-06 (0.088) R2dN8 : -6.82e-09 R2N8 : -0.0212
σ : 0.719
deviance : 238.14
__
_____
C
peak time of C : 6.45
E
wheather : wind
threshold : 5.2
memory length : 11972
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
235.42 0.721 4.31 0.34 2.15 -2.66 1.05 -4.11 0.000295 6.48 5.2 11951 -- --
255.51 0.744 4.43 0.159 2.26 -2.3 1.1 -- -0.0762 6.53 5.3 10205 -- --
238.14 0.719 4.31 0.358 2.16 -2.69 -- -4.22 7.72e-06 6.45 5.2 11972 -- --
258.46 0.749 4.44 0.229 2.28 -1.93 -- -- -0.0938 6.56 5.399 10242 -- --
476.94 1.02 4.31 0.402 -- -2.91 -- -4.12 0.127 -- 5.08 11972 -- --
291.95 0.801 4.41 1.13 2.31 -- 1.42 -- 0.0602 6.49 -- -- -- --
296.99 0.807 4.41 1.15 2.32 -- -- -- 0.0557 6.48 -- -- -- --
512.02 1.05 4.49 0.114 -- -2.15 -- -- -0.0682 -- 5.446 12001 -- --
259.29 0.75 4.45 -- 2.28 -2.08 -- -- -0.127 6.52 5.705 10247 -- --
576.67 1.12 4.45 1.21 -- -- -- -- 0.104 -- -- -- -- --
331.67 0.852 4.44 -- 2.33 -- -- -- -0.072 6.45 -- -- -- --
510.49 1.05 4.52 -- -- -2.39 -- -- -0.171 -- 5.433 11952 -- --
615 1.16 4.48 -- -- -- -- -- -0.0296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 229.79 wind 7 43200 > th dose independent rect. 15 4
2 230.10 wind 7 43200 < th dose independent rect. 15 4
4 230.34 wind 7 43200 < th dose independent rect. 14 6
20 232.88 wind 7 43200 < th dose independent rect. 14 11
36 233.55 wind 5 43200 > th dose dependent rect. 14 5
38 233.59 wind 7 43200 > th dose independent rect. 14 11
39 233.67 wind 7 43200 < th dose independent rect. 14 16
55 234.24 wind 5 14400 > th dose independent rect. 5 13
57 234.33 wind 7 43200 > th dose independent rect. 14 17
66 234.62 wind 5 14400 > th dose dependent rect. 12 4
71 234.74 wind 5 14400 < th dose independent rect. 5 13
74 234.81 wind 5 14400 > th dose independent sin 0 NA
94 235.02 wind 5 43200 > th dose dependent rect. 14 10
116 235.31 wind 5 14400 < th dose independent sin 0 NA
118 235.31 wind 5 14400 > th dose dependent rect. 15 1
152 235.72 wind 5 14400 > th dose independent rect. 24 19
182 235.93 wind 5 14400 < th dose independent rect. 24 19
248 236.51 wind 5 14400 > th dose independent rect. 9 7
276 236.73 wind 5 14400 > th dose dependent rect. 5 13
277 236.74 wind 5 14400 > th dose dependent sin 22 NA
353 237.29 wind 5 43200 < th dose independent sin 16 NA
361 237.34 wind 5 14400 < th dose independent rect. 9 7
379 237.48 wind 5 43200 > th dose independent sin 16 NA
496 238.36 wind 5 14400 > th dose independent rect. 10 21
577 238.84 wind 5 14400 > th dose dependent rect. 24 19
597 238.98 wind 5 14400 < th dose independent rect. 10 21
639 239.13 wind 5 43200 > th dose dependent sin 17 NA
856 240.15 wind 5 14400 > th dose dependent rect. 5 20
909 240.33 wind 5 14400 > th dose independent no NA NA
976 240.58 wind 5 14400 > th dose dependent rect. 20 22