BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0253700 Os02g0253700|AK072542
         (297 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0253700  Conserved hypothetical protein                      583   e-167

>Os02g0253700 Conserved hypothetical protein
          Length = 297

 Score =  583 bits (1504), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 283/297 (95%), Positives = 283/297 (95%)

Query: 1   MSGSVHLASPAINKYDRPSLDFVPPRLKIPAGTIEESVIGGGTIDHVTNKKDVERQTTKP 60
           MSGSVHLASPAINKYDRPSLDFVPPRLKIPAGTIEESVIGGGTIDHVTNKKDVERQTTKP
Sbjct: 1   MSGSVHLASPAINKYDRPSLDFVPPRLKIPAGTIEESVIGGGTIDHVTNKKDVERQTTKP 60

Query: 61  IGVMAPQDTWCRMDPKSLQQSEVDGHEGCSQNMLGYLHLASPAINKYDSRSLDFVPPHLK 120
           IGVMAPQDTWCRMDPKSLQQSEVDGHEGCSQNMLGYLHLASPAINKYDSRSLDFVPPHLK
Sbjct: 61  IGVMAPQDTWCRMDPKSLQQSEVDGHEGCSQNMLGYLHLASPAINKYDSRSLDFVPPHLK 120

Query: 121 IPAGPIEESVRGRGTIDHVTNKKDVERQTTKPIGVMAPQDTWCRVDPKSLQQSEVDGHEG 180
           IPAGPIEESVRGRGTIDHVTNKKDVERQTTKPIGVMAPQDTWCRVDPKSLQQSEVDGHEG
Sbjct: 121 IPAGPIEESVRGRGTIDHVTNKKDVERQTTKPIGVMAPQDTWCRVDPKSLQQSEVDGHEG 180

Query: 181 RSPKDSIYTNCTIPHRYSLPSKDDKDQCEYPWTKSSNQYPRTSRYYHGYYPPSSYNEGGF 240
           RSPKDSIYTNCTIPHRYSLPSKDDKDQCEYPWTKSSNQYPRTSRYYHGYYPPSSYNEGGF
Sbjct: 181 RSPKDSIYTNCTIPHRYSLPSKDDKDQCEYPWTKSSNQYPRTSRYYHGYYPPSSYNEGGF 240

Query: 241 TPSIYIERGPSPWRHHKXXXXXXXXXXXXXXPPSHYEDSYRPSNVSWNRVFSALWRW 297
           TPSIYIERGPSPWRHHK              PPSHYEDSYRPSNVSWNRVFSALWRW
Sbjct: 241 TPSIYIERGPSPWRHHKGDSSSSRYDGEGSSPPSHYEDSYRPSNVSWNRVFSALWRW 297



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.133    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,165,428
Number of extensions: 553004
Number of successful extensions: 795
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)