BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0252600 Os02g0252600|AK121113
         (234 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0252600  Aminotransferase, class IV family protein           384   e-107

>Os02g0252600 Aminotransferase, class IV family protein
          Length = 234

 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/234 (85%), Positives = 201/234 (85%)

Query: 1   PPPPATVLVTNGTVSPQAPPSAASFLDSTPXXXXXXXXXXXXXLLWWPRHLLRLADSTRL 60
           PPPPATVLVTNGTVSPQAPPSAASFLDSTP             LLWWPRHLLRLADSTRL
Sbjct: 1   PPPPATVLVTNGTVSPQAPPSAASFLDSTPGAYTTARATAAGGLLWWPRHLLRLADSTRL 60

Query: 61  LARFHPHLLGLAAPPSRKPFEDSLRGIEPLVNRSVRVALDEMPGEDMALTALLRASPAEE 120
           LARFHPHLLGLAAPPSRKPFEDSLRGIEPLVNRSVRVALDEMPGEDMALTALLRASPAEE
Sbjct: 61  LARFHPHLLGLAAPPSRKPFEDSLRGIEPLVNRSVRVALDEMPGEDMALTALLRASPAEE 120

Query: 121 ESELEVCVHLGAYVPPVFGEXXXXXXXXXXXXXXXXXXXXPWARMRKSMEKMRPPGVTEL 180
           ESELEVCVHLGAYVPPVFGE                    PWARMRKSMEKMRPPGVTEL
Sbjct: 121 ESELEVCVHLGAYVPPVFGEAGARLAVAGRGRDAAAAKYAPWARMRKSMEKMRPPGVTEL 180

Query: 181 LLTNDGDHILEGSITNFFVVCRRVSLMLGFGFLGIQTKLLVPCYWISPTETTEK 234
           LLTNDGDHILEGSITNFFVVCRRVSLMLGFGFLGIQTKLLVPCYWISPTETTEK
Sbjct: 181 LLTNDGDHILEGSITNFFVVCRRVSLMLGFGFLGIQTKLLVPCYWISPTETTEK 234



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,998,081
Number of extensions: 281865
Number of successful extensions: 1077
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1076
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)