BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0251900 Os02g0251900|AK109286
         (126 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0251900  Similar to Tobacco rattle virus-induced protei...   155   5e-39
Os02g0251800  VQ domain containing protein                         96   8e-21

>Os02g0251900 Similar to Tobacco rattle virus-induced protein variant 2
          Length = 126

 Score =  155 bits (393), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 83/126 (65%)

Query: 1   MERXXXXXXXXXXXVKVTFIETQFVTSDAAGFKSLVQRLTGNDXXXXXXXXXXXXXXXXD 60
           MER           VKVTFIETQFVTSDAAGFKSLVQRLTGND                D
Sbjct: 1   MERGCNGNGGGGGGVKVTFIETQFVTSDAAGFKSLVQRLTGNDAAVPAAPPQRPRPCRAD 60

Query: 61  GWRGAGGASATVVKREAVPPPVAPWVDEMMMLYETCDLAEMLRVDVVXXXXXXXXXXXXX 120
           GWRGAGGASATVVKREAVPPPVAPWVDEMMMLYETCDLAEMLRVDVV             
Sbjct: 61  GWRGAGGASATVVKREAVPPPVAPWVDEMMMLYETCDLAEMLRVDVVGASGGGRCHGGGG 120

Query: 121 XXXFPC 126
              FPC
Sbjct: 121 YGGFPC 126



>Os02g0251800 VQ domain containing protein
          Length = 116

 Score = 95.5 bits (236), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 63/97 (64%), Gaps = 10/97 (10%)

Query: 15  VKVTFIETQFVTSDAAGFKSLVQRLTGNDXXXXXXXXXXX---XXXXXDGWRGAGGASAT 71
           VKVTFIETQFVTSDAAGFKSLVQRLTGND                   DGWR   GA AT
Sbjct: 11  VKVTFIETQFVTSDAAGFKSLVQRLTGNDAAVATAPSLERPRPCRRGVDGWR---GAEAT 67

Query: 72  VVKREAVPPPVAPWVD--EMMMLYETCDLAEMLRVDV 106
           V     +P   APW+D  EMMMLYETCDLA+ML VDV
Sbjct: 68  VGV--GLPAAPAPWMDEIEMMMLYETCDLADMLCVDV 102



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,832,747
Number of extensions: 75470
Number of successful extensions: 322
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 2
Length of query: 126
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 37
Effective length of database: 12,388,755
Effective search space: 458383935
Effective search space used: 458383935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)