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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0251900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tobacco rattle virus-induced protein variant 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0538) R2 : 0.15
β1 : -1.27 (0.275) R2dD : 0.0973 R2D : -0.0967
β2 : 0.637 (0.128) R2dC : 0.0493 R2C : 0.0405
β3 : -1.63 (0.256) R2dE : 0.197 R2E : -0.0131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.395 (0.134) R2dN8 : 0.04 R2N8 : -0.0397
σ : 0.95
deviance : 416.08
__
_____
C
peak time of C : 3.7
E
wheather : temperature
threshold : 19.61
memory length : 11573
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
417.34 0.96 4.57 -1.07 0.667 -1.5 0.612 0.448 -0.369 3.66 20.1 4567 -- --
417.11 0.951 4.55 -1.05 0.663 -1.53 0.658 -- -0.35 3.66 19.91 5882 -- --
418.09 0.952 4.56 -1.05 0.667 -1.51 -- 0.47 -0.373 3.7 20.2 4597 -- --
416.08 0.95 4.59 -1.27 0.637 -1.63 -- -- -0.395 3.7 19.61 11573 -- --
441.72 0.979 4.56 -1.13 -- -1.61 -- 0.0343 -0.377 -- 19.92 5666 -- --
461.1 1.01 4.45 -0.0245 0.685 -- 0.577 -- 0.0879 3.66 -- -- -- --
462.02 1.01 4.45 -0.0334 0.693 -- -- -- 0.0844 3.87 -- -- -- --
438.7 0.976 4.58 -1.51 -- -1.93 -- -- -0.464 -- 19.5 11401 -- --
435.32 0.972 4.5 -- 0.706 -0.979 -- -- -0.171 4.1 20.8 4598 -- --
488.38 1.03 4.45 -0.00483 -- -- -- -- 0.103 -- -- -- -- --
462.04 1.01 4.45 -- 0.692 -- -- -- 0.0881 3.87 -- -- -- --
458.54 0.997 4.52 -- -- -0.862 -- -- -0.201 -- 22.7 5295 -- --
488.38 1.03 4.45 -- -- -- -- -- 0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 402.31 precipitation 0.1 43200 > th dose dependent rect. 3 5
2 402.50 precipitation 0.1 43200 > th dose dependent rect. 1 7
4 402.60 precipitation 0.1 43200 > th dose independent rect. 3 5
5 402.64 precipitation 0.1 43200 < th dose independent rect. 3 5
6 402.64 precipitation 0.1 43200 < th dose dependent rect. 3 5
8 402.84 precipitation 0.1 43200 > th dose independent rect. 1 7
9 402.85 precipitation 0.1 43200 < th dose independent rect. 1 7
10 402.85 precipitation 0.1 43200 < th dose dependent rect. 1 7
27 403.35 precipitation 0.1 43200 > th dose dependent rect. 23 9
48 403.72 precipitation 0.1 43200 > th dose independent rect. 23 9
50 403.75 precipitation 0.1 43200 < th dose independent rect. 23 9
51 403.75 precipitation 0.1 43200 < th dose dependent rect. 23 9
88 404.60 precipitation 0.1 43200 > th dose dependent rect. 5 1
89 404.62 precipitation 0.1 43200 > th dose independent rect. 7 1
98 404.73 precipitation 0.1 43200 > th dose dependent rect. 7 1
101 404.92 precipitation 0.1 43200 > th dose independent rect. 5 1
116 405.15 wind 3.0 43200 > th dose independent rect. 8 1
138 405.68 precipitation 0.1 43200 < th dose independent rect. 7 1
139 405.68 precipitation 0.1 43200 < th dose dependent rect. 7 1
164 406.25 wind 3.0 43200 < th dose dependent rect. 3 2
168 406.30 wind 1.0 4320 < th dose dependent rect. 6 1
178 406.49 wind 3.0 43200 < th dose independent rect. 8 1
190 406.78 temperature 20.0 14400 < th dose dependent rect. 6 1
247 407.73 radiation 40.0 1440 < th dose independent rect. 15 18
265 408.11 humidity 80.0 43200 > th dose dependent rect. 16 1
269 408.27 wind 1.0 43200 > th dose dependent rect. 8 1
275 408.34 wind 9.0 43200 > th dose independent rect. 18 2
283 408.47 wind 9.0 43200 < th dose independent rect. 18 2
298 408.82 humidity 90.0 14400 < th dose independent rect. 14 2
299 408.84 atmosphere 1005.0 14400 < th dose independent rect. 17 1
303 408.89 humidity 70.0 43200 > th dose independent rect. 23 9
304 408.89 wind 9.0 43200 < th dose dependent rect. 8 1
305 408.91 wind 5.0 43200 < th dose dependent rect. 8 1
312 409.06 wind 1.0 43200 > th dose independent rect. 18 1
314 409.11 wind 1.0 43200 < th dose independent rect. 18 1
316 409.31 temperature 20.0 43200 < th dose independent rect. 8 1
318 409.36 temperature 20.0 43200 > th dose independent rect. 8 2
319 409.38 humidity 70.0 43200 < th dose independent rect. 22 10
341 409.67 wind 1.0 43200 > th dose independent rect. 19 17
344 409.73 temperature 30.0 43200 < th dose dependent rect. 7 1
361 409.82 temperature 10.0 43200 > th dose dependent rect. 7 1
386 409.97 wind 1.0 43200 > th dose dependent rect. 3 1
390 409.99 radiation 40.0 4320 < th dose independent rect. 5 4
401 410.06 wind 9.0 43200 < th dose dependent rect. 3 1
406 410.08 temperature 20.0 14400 < th dose independent rect. 6 4
454 410.28 temperature 20.0 14400 > th dose independent rect. 6 5
463 410.30 radiation 40.0 4320 < th dose independent rect. 2 7
479 410.34 atmosphere 1005.0 14400 > th dose independent rect. 17 1
489 410.36 temperature 20.0 14400 < th dose independent rect. 5 9
499 410.39 temperature 25.0 43200 < th dose dependent sin 2 NA
509 410.41 wind 5.0 43200 > th dose independent rect. 5 1
511 410.41 temperature 20.0 14400 > th dose independent rect. 5 9
575 410.55 wind 7.0 43200 > th dose dependent rect. 18 1
614 410.61 temperature 10.0 43200 > th dose dependent rect. 18 1
628 410.63 humidity 90.0 14400 > th dose independent rect. 6 1
635 410.64 temperature 30.0 43200 < th dose dependent rect. 18 1
651 410.65 wind 9.0 14400 > th dose dependent rect. 5 6
700 410.71 radiation 40.0 4320 < th dose independent rect. 22 11
702 410.71 precipitation 0.1 43200 > th dose dependent sin 6 NA
731 410.74 precipitation 0.1 43200 < th dose independent sin 6 NA
733 410.74 precipitation 0.1 43200 < th dose dependent sin 6 NA
744 410.75 temperature 30.0 43200 < th dose dependent rect. 20 1
753 410.76 humidity 80.0 43200 > th dose independent rect. 15 2
756 410.76 temperature 10.0 43200 > th dose dependent rect. 18 3
757 410.76 temperature 30.0 43200 < th dose dependent rect. 18 3
776 410.78 precipitation 0.1 43200 > th dose independent sin 6 NA
779 410.78 temperature 10.0 43200 > th dose dependent rect. 20 1
834 410.83 temperature 10.0 43200 > th dose dependent rect. 5 16
842 410.84 temperature 30.0 43200 < th dose dependent rect. 16 1
864 410.86 temperature 30.0 43200 < th dose dependent rect. 16 5
878 410.87 precipitation 0.1 43200 > th dose dependent rect. 23 15
885 410.88 temperature 10.0 43200 > th dose dependent sin 2 NA
906 410.89 radiation 40.0 4320 < th dose independent rect. 19 14
922 410.90 wind 5.0 43200 < th dose independent rect. 5 1
936 410.91 humidity 90.0 14400 < th dose independent rect. 12 5
938 410.91 temperature 25.0 43200 < th dose dependent no NA NA
955 410.91 temperature 25.0 43200 < th dose dependent rect. 12 23
969 410.92 temperature 25.0 43200 < th dose dependent rect. 14 23
972 410.92 temperature 25.0 43200 < th dose dependent rect. 18 23