BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0230200 Os02g0230200|AK105482
         (352 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0230200  Conserved hypothetical protein                      620   e-178
Os01g0748200  Conserved hypothetical protein                      239   2e-63

>Os02g0230200 Conserved hypothetical protein
          Length = 352

 Score =  620 bits (1599), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 322/352 (91%), Positives = 322/352 (91%)

Query: 1   MDAFLAGIPQLRRPAALIASCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRLDARVE 60
           MDAFLAGIPQLRRPAALIASCC                              VRLDARVE
Sbjct: 1   MDAFLAGIPQLRRPAALIASCCALVLLATVLLLPRAPPAAPEQLASAAAAAAVRLDARVE 60

Query: 61  RRSGNEVLWQLPPPTTPPRAAVFVAPGCTIRATDFFDASPGCPRCAGLPEERRFTREALR 120
           RRSGNEVLWQLPPPTTPPRAAVFVAPGCTIRATDFFDASPGCPRCAGLPEERRFTREALR
Sbjct: 61  RRSGNEVLWQLPPPTTPPRAAVFVAPGCTIRATDFFDASPGCPRCAGLPEERRFTREALR 120

Query: 121 RGYAVLAVSSRAECWSLDTGDGGELAAVESIIEWWVKERHPNQLAGLPLVGIGASSGGYF 180
           RGYAVLAVSSRAECWSLDTGDGGELAAVESIIEWWVKERHPNQLAGLPLVGIGASSGGYF
Sbjct: 121 RGYAVLAVSSRAECWSLDTGDGGELAAVESIIEWWVKERHPNQLAGLPLVGIGASSGGYF 180

Query: 181 LSALAARVRFSSVAIMIAEGVFATMEEIPARYPPALFVQMPKDGERAREVAASMGKLRGS 240
           LSALAARVRFSSVAIMIAEGVFATMEEIPARYPPALFVQMPKDGERAREVAASMGKLRGS
Sbjct: 181 LSALAARVRFSSVAIMIAEGVFATMEEIPARYPPALFVQMPKDGERAREVAASMGKLRGS 240

Query: 241 RVSVREIQCGEFAVSAQFLAARIPGLTLAVADGLVDVLRRKGFVDEKGFLKNDGRSTPWK 300
           RVSVREIQCGEFAVSAQFLAARIPGLTLAVADGLVDVLRRKGFVDEKGFLKNDGRSTPWK
Sbjct: 241 RVSVREIQCGEFAVSAQFLAARIPGLTLAVADGLVDVLRRKGFVDEKGFLKNDGRSTPWK 300

Query: 301 KAAEEAKILPEEFRLERHVTEELNLAYAYHEFTSLKNGEIFDWFESHMDHKS 352
           KAAEEAKILPEEFRLERHVTEELNLAYAYHEFTSLKNGEIFDWFESHMDHKS
Sbjct: 301 KAAEEAKILPEEFRLERHVTEELNLAYAYHEFTSLKNGEIFDWFESHMDHKS 352



>Os01g0748200 Conserved hypothetical protein
          Length = 356

 Score =  239 bits (610), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/286 (45%), Positives = 172/286 (60%), Gaps = 10/286 (3%)

Query: 64  GNEVLWQLPPPTTPPRAAVFVAPGCTIRATDFFDASPGCPRCAGLPEERRFTREALRRGY 123
           G   +W+LP    P RA +FVA GC  R  +F+  SP CP C GLPE+   T  ALRR +
Sbjct: 81  GARAIWELP--AAPARAVLFVAHGCHCRPENFWPPSPRCPGCVGLPEDVAITERALRRRF 138

Query: 124 AVLAVSSRAECWSLDTGDGGELAAVESIIEWWVKERHPNQLAGLPLVGIGASSGGYFLSA 183
           AVLA++S  ECWS+    G E++A +  I  W  E   N LA LP+  +GASSGGYF+S 
Sbjct: 139 AVLALASARECWSM----GKEVSAAKRGIRSWATE---NGLADLPVAALGASSGGYFVSR 191

Query: 184 LAARVRFSSVAIMIAEGVFATMEEIPARYPPALFVQMPKDGERAREVAASMGKLRGSRVS 243
           LAA ++ ++V +MIAEG F      PA YPPA+F+ MPKD  RA  V  +   LR + V 
Sbjct: 192 LAAEMKLAAVVLMIAEGSFGP-GGAPAGYPPAMFLHMPKDQRRAALVERNSKMLRSNGVE 250

Query: 244 VREIQCGEFAVSAQFLAARIPGLTLAVADGLVDVLRRKGFVDEKGFLKNDGRSTPWKKAA 303
           V E++  E  ++   L+ RIPGL   +++ +  V    GFVDE+GF++ DGR+TPWK A 
Sbjct: 251 VNELRSLELPLTPTMLSDRIPGLNRGLSERIWRVFTEDGFVDERGFMRKDGRATPWKDAV 310

Query: 304 EEAKILPEEFRLERHVTEELNLAYAYHEFTSLKNGEIFDWFESHMD 349
            +     E      H+ EELNLAY YHE TSL   E+FDW E H+ 
Sbjct: 311 VKRGFWEEVAGWADHIQEELNLAYGYHEMTSLHTDEMFDWIEEHLS 356



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,231,508
Number of extensions: 532202
Number of successful extensions: 1823
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1820
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 250
Effective length of database: 11,709,973
Effective search space: 2927493250
Effective search space used: 2927493250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)