BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0215000 Os02g0215000|AK072483
         (734 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0215000  Conserved hypothetical protein                     1146   0.0  
AK106858                                                          167   3e-41

>Os02g0215000 Conserved hypothetical protein
          Length = 734

 Score = 1146 bits (2964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/734 (79%), Positives = 581/734 (79%)

Query: 1   MDHPWRFPAGDELCPVCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDHPWRFPAGDELCPVCAA                                         
Sbjct: 1   MDHPWRFPAGDELCPVCAAPHFPFCPPPPHPFHPPPPPPPPPEYHVPFHPPPPMWAPPGP 60

Query: 61  XXYEVLDMEAPHKRMRXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLGLIRDHXXXXXXXX 120
             YEVLDMEAPHKRMR                           RLLGLIRDH        
Sbjct: 61  HPYEVLDMEAPHKRMRVGDPYGDGMPPPLPPPPPPGMVPVEGDRLLGLIRDHGRPPFPPP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHEGSFPDYEHAGRFPPAHERLAALGS 180
                                            AHEGSFPDYEHAGRFPPAHERLAALGS
Sbjct: 121 PGMLHGEPYPPPDRFGYGGGRGYPPPPNYDNPYAHEGSFPDYEHAGRFPPAHERLAALGS 180

Query: 181 SFVPGGPQEGYFNHDHRYNRFQRSESXXXXXXXXXXXXXXXRSRYDSHGWHXXXXXXXXX 240
           SFVPGGPQEGYFNHDHRYNRFQRSES               RSRYDSHGWH         
Sbjct: 181 SFVPGGPQEGYFNHDHRYNRFQRSESPVAPPLPPPARYPEARSRYDSHGWHPEADVPPPP 240

Query: 241 XXXXXXXXSSSDYHAKPPLQAVKSSLFPIHSGSPAATARPPSSHTLHQAHLMPNANRYNG 300
                   SSSDYHAKPPLQAVKSSLFPIHSGSPAATARPPSSHTLHQAHLMPNANRYNG
Sbjct: 241 PPLEPPVPSSSDYHAKPPLQAVKSSLFPIHSGSPAATARPPSSHTLHQAHLMPNANRYNG 300

Query: 301 PIHNEVPGLAYQPHLEQHLGGGRQTQAQHSINNAKISVISACDLFKQPLRGSRPDHIVII 360
           PIHNEVPGLAYQPHLEQHLGGGRQTQAQHSINNAKISVISACDLFKQPLRGSRPDHIVII
Sbjct: 301 PIHNEVPGLAYQPHLEQHLGGGRQTQAQHSINNAKISVISACDLFKQPLRGSRPDHIVII 360

Query: 361 LRGLPGSGKSYLAKALRDLEVENGGNAPRIHSMDDYFMIEVEKKVEDNEXXXXXXXXXXR 420
           LRGLPGSGKSYLAKALRDLEVENGGNAPRIHSMDDYFMIEVEKKVEDNE          R
Sbjct: 361 LRGLPGSGKSYLAKALRDLEVENGGNAPRIHSMDDYFMIEVEKKVEDNEGSKSSSTSKGR 420

Query: 421 KQLTKKVIEYCYEPEMEETYRSSMLNAFKKTLDEGNFTFVIVDDRNLRVADFAQFWASAK 480
           KQLTKKVIEYCYEPEMEETYRSSMLNAFKKTLDEGNFTFVIVDDRNLRVADFAQFWASAK
Sbjct: 421 KQLTKKVIEYCYEPEMEETYRSSMLNAFKKTLDEGNFTFVIVDDRNLRVADFAQFWASAK 480

Query: 481 KSGYEVYLLEAPYKDPTGCAARNVHGFTVDDVNKMAADWEEAPPLYLRLDIHSLFNDDNL 540
           KSGYEVYLLEAPYKDPTGCAARNVHGFTVDDVNKMAADWEEAPPLYLRLDIHSLFNDDNL
Sbjct: 481 KSGYEVYLLEAPYKDPTGCAARNVHGFTVDDVNKMAADWEEAPPLYLRLDIHSLFNDDNL 540

Query: 541 REHSIQEVDMETEDTDGASNTATSTEAENTQKAVSESLDNGHDQGAGKKWDSSEEDDLDG 600
           REHSIQEVDMETEDTDGASNTATSTEAENTQKAVSESLDNGHDQGAGKKWDSSEEDDLDG
Sbjct: 541 REHSIQEVDMETEDTDGASNTATSTEAENTQKAVSESLDNGHDQGAGKKWDSSEEDDLDG 600

Query: 601 YKELGQSKWSKDFDEDTEKSDHAEGSTHALSGLAQTYSTHRKTVTWGDRLEKGGFSIGAA 660
           YKELGQSKWSKDFDEDTEKSDHAEGSTHALSGLAQTYSTHRKTVTWGDRLEKGGFSIGAA
Sbjct: 601 YKELGQSKWSKDFDEDTEKSDHAEGSTHALSGLAQTYSTHRKTVTWGDRLEKGGFSIGAA 660

Query: 661 KRRLTSSLIIGPGSGYNLVSNPLAEDNSKQAKGVINTDTKKRFSEQLRDEGESFRAVFDK 720
           KRRLTSSLIIGPGSGYNLVSNPLAEDNSKQAKGVINTDTKKRFSEQLRDEGESFRAVFDK
Sbjct: 661 KRRLTSSLIIGPGSGYNLVSNPLAEDNSKQAKGVINTDTKKRFSEQLRDEGESFRAVFDK 720

Query: 721 RRQRVGVFGNGDGE 734
           RRQRVGVFGNGDGE
Sbjct: 721 RRQRVGVFGNGDGE 734



>AK106858 
          Length = 295

 Score =  167 bits (423), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/207 (48%), Positives = 101/207 (48%)

Query: 63  YEVLDMEAPHKRMRXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLGLIRDHXXXXXXXXXX 122
           YEVLDMEAPHKRMR                           RLLGLIRDH          
Sbjct: 82  YEVLDMEAPHKRMRVGDPYGDGMPPPLPPPPPPGMVPVEGDRLLGLIRDHGRPPFPPPPG 141

Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHEGSFPDYEHAGRFPPAHERLAALGSSF 182
                                          AHEGSFPDYEHAGRFPPAHERLAALGSSF
Sbjct: 142 MLHGEPYPPPDRFGYGGGRGYPPPPNYDNPYAHEGSFPDYEHAGRFPPAHERLAALGSSF 201

Query: 183 VPGGPQEGYFNHDHRYNRFQRSESXXXXXXXXXXXXXXXRSRYDSHGWHXXXXXXXXXXX 242
           VPGGPQEGYFNHDHRYNRFQRSES               RSRYDSHGWH           
Sbjct: 202 VPGGPQEGYFNHDHRYNRFQRSESPVAPPLPPPARYPEARSRYDSHGWHPEADVPPPPPP 261

Query: 243 XXXXXXSSSDYHAKPPLQAVKSSLFPI 269
                 SSSDYHAKPPLQA   S  P 
Sbjct: 262 LEPPVPSSSDYHAKPPLQACFGSRRPT 288



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,631,386
Number of extensions: 933346
Number of successful extensions: 2443
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2440
Number of HSP's successfully gapped: 2
Length of query: 734
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 626
Effective length of database: 11,396,689
Effective search space: 7134327314
Effective search space used: 7134327314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)