Os02g0215000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0215000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.95 | 0.188 | 10.3 | 0.318 | 0.549 | -0.441 | 0.131 | 1.22 | 0.214 | 7.75 | 28.2 | 1215 | -- | -- |
| 16.84 | 0.191 | 10.4 | -0.0126 | 0.546 | -0.325 | 0.262 | -- | 0.111 | 7.65 | 28.2 | 1135 | -- | -- |
| 15.99 | 0.186 | 10.3 | 0.298 | 0.545 | -0.444 | -- | 1.17 | 0.205 | 7.69 | 28.2 | 1185 | -- | -- |
| 16.69 | 0.19 | 10.4 | -0.029 | 0.528 | -0.344 | -- | -- | 0.109 | 7.68 | 28.1 | 1119 | -- | -- |
| 22.46 | 0.221 | 10.4 | 0.247 | -- | -0.667 | -- | 0.949 | 0.217 | -- | 27.01 | 694 | -- | -- |
| 20.78 | 0.214 | 10.4 | -0.125 | 0.579 | -- | 0.138 | -- | 0.0516 | 8.17 | -- | -- | -- | -- |
| 20.84 | 0.214 | 10.4 | -0.121 | 0.579 | -- | -- | -- | 0.0514 | 8.14 | -- | -- | -- | -- |
| 22.63 | 0.222 | 10.4 | 0.0455 | -- | -0.642 | -- | -- | 0.147 | -- | 27.52 | 664 | -- | -- |
| 16.66 | 0.19 | 10.4 | -- | 0.507 | -0.374 | -- | -- | 0.115 | 7.67 | 28.2 | 1068 | -- | -- |
| 39.29 | 0.293 | 10.4 | -0.116 | -- | -- | -- | -- | 0.0583 | -- | -- | -- | -- | -- |
| 21.22 | 0.215 | 10.4 | -- | 0.579 | -- | -- | -- | 0.0648 | 8.15 | -- | -- | -- | -- |
| 22.68 | 0.222 | 10.4 | -- | -- | -0.634 | -- | -- | 0.141 | -- | 27.51 | 664 | -- | -- |
| 39.64 | 0.294 | 10.4 | -- | -- | -- | -- | -- | 0.0711 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 2 | 16.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 12 | 16.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 15 | 16.42 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 55 | 16.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 62 | 16.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 65 | 16.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 70 | 16.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 76 | 16.50 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 86 | 16.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 4 | 22 |
| 90 | 16.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 97 | 16.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 98 | 16.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 99 | 16.51 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 104 | 16.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 4 | 19 |
| 339 | 16.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 13 |
| 345 | 16.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 430 | 16.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 522 | 16.88 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 560 | 16.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 15 |
| 564 | 16.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 589 | 16.94 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 602 | 16.95 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 18 |
| 622 | 16.96 | temperature | 10 | 270 | > th | dose dependent | sin | 19 | NA |
| 637 | 16.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 667 | 17.00 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 807 | 17.07 | temperature | 25 | 720 | > th | dose dependent | sin | 10 | NA |
| 827 | 17.08 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 9 |
| 840 | 17.09 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 945 | 17.15 | radiation | 1 | 270 | > th | dose independent | sin | 19 | NA |