BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0175900 Os02g0175900|AK064060
         (425 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0175900  Conserved hypothetical protein                      607   e-174

>Os02g0175900 Conserved hypothetical protein
          Length = 425

 Score =  607 bits (1564), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 317/425 (74%), Positives = 317/425 (74%)

Query: 1   MDSLLANYASSDDEADETLXXXXXXXXXXXXXXSGGGIFSSLPQPKSALLFSSLPAPKSG 60
           MDSLLANYASSDDEADETL              SGGGIFSSLPQPKSALLFSSLPAPKSG
Sbjct: 1   MDSLLANYASSDDEADETLPTPPAAAAARPKPPSGGGIFSSLPQPKSALLFSSLPAPKSG 60

Query: 61  PVFSAIPPPKSSSGNPKRVVQFRPPPIRQPTGXXXXXXXXXXXKRRPSEAEPRPPVSAGT 120
           PVFSAIPPPKSSSGNPKRVVQFRPPPIRQPTG           KRRPSEAEPRPPVSAGT
Sbjct: 61  PVFSAIPPPKSSSGNPKRVVQFRPPPIRQPTGESSDEEDDDAEKRRPSEAEPRPPVSAGT 120

Query: 121 GPVSSFLPPPKXXXXXXXXXXXXXXXIDTAAPERSNVVAAGPSSSAVNAIAPERPXXXXX 180
           GPVSSFLPPPK               IDTAAPERSNVVAAGPSSSAVNAIAPERP     
Sbjct: 121 GPVSSFLPPPKRSLGLGGGGAARRSAIDTAAPERSNVVAAGPSSSAVNAIAPERPDTTSA 180

Query: 181 XXXXXXXXXXXXXXXMPVPEEQQEQLAVDSEAGXXXXXXXXSYDAGVGSSNGQEGYAWDP 240
                          MPVPEEQQEQLAVDSEAG        SYDAGVGSSNGQEGYAWDP
Sbjct: 181 DDEDDESNGSSDDDEMPVPEEQQEQLAVDSEAGQQQQNQQQSYDAGVGSSNGQEGYAWDP 240

Query: 241 XXXXXXXXXXXWDPSGNVNYGTEAQYAAYGGEHGGVYGNTYGVEHGDGYGHSTEMXXXXX 300
                      WDPSGNVNYGTEAQYAAYGGEHGGVYGNTYGVEHGDGYGHSTEM     
Sbjct: 241 NYYANYGANYGWDPSGNVNYGTEAQYAAYGGEHGGVYGNTYGVEHGDGYGHSTEMAYGGG 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXEVGRIGGKRGRSDMPAEILEVNQAELMKNRPREDKS 360
                                   EVGRIGGKRGRSDMPAEILEVNQAELMKNRPREDKS
Sbjct: 301 YAGGYEHNAAAATAPPIQQPILPPEVGRIGGKRGRSDMPAEILEVNQAELMKNRPREDKS 360

Query: 361 KLTGMAFGPSYQPAPSAKGKPSKLHKRKHQIGSLFYDMKQKEMELAERRSKGFLTKAETQ 420
           KLTGMAFGPSYQPAPSAKGKPSKLHKRKHQIGSLFYDMKQKEMELAERRSKGFLTKAETQ
Sbjct: 361 KLTGMAFGPSYQPAPSAKGKPSKLHKRKHQIGSLFYDMKQKEMELAERRSKGFLTKAETQ 420

Query: 421 AKYGW 425
           AKYGW
Sbjct: 421 AKYGW 425



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,774,981
Number of extensions: 607129
Number of successful extensions: 2603
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2594
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 321
Effective length of database: 11,605,545
Effective search space: 3725379945
Effective search space used: 3725379945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 157 (65.1 bits)