BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0150000 Os02g0150000|Os02g0150000
         (162 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0150000  Conserved hypothetical protein                       95   2e-20

>Os02g0150000 Conserved hypothetical protein
          Length = 162

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 65/162 (40%)

Query: 1   MAKNDFATSLRVKLVGATXXXXXXXXXXXXXXXXXXXXXLPRLGIXXXXXXXXXXXXXXX 60
           MAKNDFATSLRVKLVGAT                     LPRLGI               
Sbjct: 1   MAKNDFATSLRVKLVGATPLPARLSPPAPPASVVRACACLPRLGIGASAMWRRGRAMRWR 60

Query: 61  XXXKYSXXXXXXXXXXXXXXXXRGVPIXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXRCK 120
              KYS                RGVPI           R                  RCK
Sbjct: 61  RRWKYSLPAACLALVLLAAAAARGVPIGGGGMAHTGGGRVVVASSTAAFDAAAAAASRCK 120

Query: 121 KQRSSXXXXXXXXXXXXXWSPPAAAAADERVVPTGSNPLHNR 162
           KQRSS             WSPPAAAAADERVVPTGSNPLHNR
Sbjct: 121 KQRSSRGGATGPAAAGRGWSPPAAAAADERVVPTGSNPLHNR 162



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,103,684
Number of extensions: 36152
Number of successful extensions: 127
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)