BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0142400 Os02g0142400|AK106722
(465 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0142400 Conserved hypothetical protein 836 0.0
Os02g0146300 197 1e-50
Os02g0147500 Conserved hypothetical protein 175 8e-44
>Os02g0142400 Conserved hypothetical protein
Length = 465
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/448 (90%), Positives = 407/448 (90%)
Query: 18 EDGVRHHQARARFFSKVXXXXXXXXXXXXXXXXVAPLASLSISESHREVCIPSSSAAVEG 77
EDGVRHHQARARFFSKV VAPLASLSISESHREVCIPSSSAAVEG
Sbjct: 18 EDGVRHHQARARFFSKVGDADRGAQPRRRRGGGVAPLASLSISESHREVCIPSSSAAVEG 77
Query: 78 TAGETSPPVSDAALEVWRRWLRASTRRSLSSFMDQASSETHXXXXXXXXXXXXXXXXXXX 137
TAGETSPPVSDAALEVWRRWLRASTRRSLSSFMDQASSETH
Sbjct: 78 TAGETSPPVSDAALEVWRRWLRASTRRSLSSFMDQASSETHAPPPTPRPSPPRVLPPPPL 137
Query: 138 XXXXXXKGCRTAASSASLSRNYSTSSTNSQSPPEPRDSCRDDRSLDIWYTAKEFVKKYPV 197
KGCRTAASSASLSRNYSTSSTNSQSPPEPRDSCRDDRSLDIWYTAKEFVKKYPV
Sbjct: 138 SAARRAKGCRTAASSASLSRNYSTSSTNSQSPPEPRDSCRDDRSLDIWYTAKEFVKKYPV 197
Query: 198 VLFAQPTDTHSQFHRWVYQEWFKPTVRSLLKCVSDHHASNLEFQEITTENVKIFCNADAP 257
VLFAQPTDTHSQFHRWVYQEWFKPTVRSLLKCVSDHHASNLEFQEITTENVKIFCNADAP
Sbjct: 198 VLFAQPTDTHSQFHRWVYQEWFKPTVRSLLKCVSDHHASNLEFQEITTENVKIFCNADAP 257
Query: 258 QFIPRIKIYCETRKATYEGRKQNFVQTGELITELIKSSVDNPTEVLDLLSEDIKDKLSML 317
QFIPRIKIYCETRKATYEGRKQNFVQTGELITELIKSSVDNPTEVLDLLSEDIKDKLSML
Sbjct: 258 QFIPRIKIYCETRKATYEGRKQNFVQTGELITELIKSSVDNPTEVLDLLSEDIKDKLSML 317
Query: 318 KNPDLSHDADPRQCGVYILVNHPSMLRREMQSPFYLACYDLLMSVDKRIANRAFRKLPYK 377
KNPDLSHDADPRQCGVYILVNHPSMLRREMQSPFYLACYDLLMSVDKRIANRAFRKLPYK
Sbjct: 318 KNPDLSHDADPRQCGVYILVNHPSMLRREMQSPFYLACYDLLMSVDKRIANRAFRKLPYK 377
Query: 378 NWQSRALQHPLLKDHLINRRSSYGRDKYHQARYHRNVASHKTSWKSKYKAEEVDEIIHHH 437
NWQSRALQHPLLKDHLINRRSSYGRDKYHQARYHRNVASHKTSWKSKYKAEEVDEIIHHH
Sbjct: 378 NWQSRALQHPLLKDHLINRRSSYGRDKYHQARYHRNVASHKTSWKSKYKAEEVDEIIHHH 437
Query: 438 FPMILTRLMKVLSKMKLLIRLTLHNFFG 465
FPMILTRLMKVLSKMKLLIRLTLHNFFG
Sbjct: 438 FPMILTRLMKVLSKMKLLIRLTLHNFFG 465
>Os02g0146300
Length = 324
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 23/304 (7%)
Query: 171 EPRDSCRDDRSLDIWYTAKEFVKKYPVVLFAQPTDT-HSQFHRWVYQEWFKPTVRSLLKC 229
+P RD SL+ Y F +K+P V F P D S F R + EW KP +R +L+
Sbjct: 22 DPTVQYRDKHSLETCYEPLFFFRKHPAVEFHHPIDAPDSMFDRVILTEWAKPAMRGVLET 81
Query: 230 VSDHHASNLEFQEITTENVKIFCNADAPQFIPRIKIYCETRKATYEGRKQNFVQTGELIT 289
+S HH++NLE E + +++KIFCN P+F PR K+ C TR AT EG + N++Q G++
Sbjct: 82 ISSHHSANLELTEFSLKDLKIFCNYQTPEFKPRFKLVCGTRNATCEGMRMNYIQAGQIFK 141
Query: 290 ELIKSSVDNPTEVLDLLSEDIKDKLSMLKNPDLSHDADPRQCGVYILVNHPSMLRREMQS 349
E++ +S+ P+ D+L ED +D L ML+NP L Y++ NHP++L ++ S
Sbjct: 142 EIVNASLGTPSS-WDILIEDFQDLLQMLENPILEE--------AYLMRNHPALLALKLHS 192
Query: 350 PFYLACYDLLMSVDKRIANRAFRKLPY------KNWQSRALQHPLLKDHLINRRSSYGRD 403
F++ACY+ LM + F+ LPY +W+ R QHP L L ++ +SYG
Sbjct: 193 QFFMACYETLMRASLQSVFEVFKMLPYGMNDSSGHWKVRLEQHPYLWWMLHSQFTSYGDR 252
Query: 404 KYHQARYHRNVASHKTSWKSK-------YKAEEVDEIIHHHFPMILTRLMKVLSKMKLLI 456
Q RY RN + HK +K Y A +VD +++ + PM L LM+ + LL
Sbjct: 253 NSEQCRYRRNYSCHKIHHLTKRTERFKWYSANDVDMLLYQYLPMSLPGLMRAMWDEGLLA 312
Query: 457 RLTL 460
L
Sbjct: 313 LFCL 316
>Os02g0147500 Conserved hypothetical protein
Length = 543
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 155/294 (52%), Gaps = 22/294 (7%)
Query: 166 SQSPPE---PRDSCRDDRSLDIWYTAKEFVKKYPVVLFAQPTDT-HSQFHRWVYQEWFKP 221
+ SPP+ D C L+ Y EFV+ +P V+F++P + + + RWV++ WF+
Sbjct: 182 NSSPPDYDLCSDRCSLGDMLEASYDPVEFVRNFPAVMFSKPKNAPDTLYDRWVFKGWFQS 241
Query: 222 TVRSLLKCVSDHHASNLEFQEITTENVKIFCNADAPQFIPRIKIYCETRKATYEGRKQNF 281
+R +L + DHH + LEF++I TE + I CN D+ +F PR + +TR T+EG+K+N+
Sbjct: 242 AIRDILSKLEDHHIAGLEFEDINTETMTIACNIDSSEFYPRFNFHGKTRNITFEGQKRNY 301
Query: 282 VQTGELITELIKSSVDNPTEVL---DLLSEDIKDKLSMLKNPDLSHDADPRQCGVYILVN 338
Q G + +LI S LL+ED KD L+ +++P L + Y+L N
Sbjct: 302 TQLGSTLEKLIAISASASNVHAYHHQLLTEDAKDLLNKMRHPSLD------RFEAYMLRN 355
Query: 339 HPSMLRREMQSPFYLACYDLLMSVDKRIANRAFRKLPY------KNWQSRALQHPLLKDH 392
HPS+L+ E + FYL C+D L + ++ F+ LPY +W + A QHPLL
Sbjct: 356 HPSLLQIEAHASFYLTCFDHLKLLPQKPVENFFKGLPYAVGDQHGDWIAIAHQHPLLSMQ 415
Query: 393 LINRRSSYGRDKYHQARYHRNVASHKTSWKSKYKAEEVDEIIHHHFPMILTRLM 446
L + Y + QA Y R+ H+T SKY + I H +FP L +M
Sbjct: 416 LSH---GYRISNWSQATYRRDGYCHRTEPGSKYSIVQTHRIYHQYFPRTLPAMM 466
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.130 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,593,351
Number of extensions: 503912
Number of successful extensions: 1616
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1605
Number of HSP's successfully gapped: 3
Length of query: 465
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 361
Effective length of database: 11,605,545
Effective search space: 4189601745
Effective search space used: 4189601745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)