Os02g0142400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0142400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.39 | 0.509 | 3.08 | -0.238 | 0.132 | 5.67 | 0.103 | 17.8 | -0.0206 | 11 | 9.28 | 30 | -- | -- |
| 119.13 | 0.508 | 3.04 | -0.362 | 0.106 | 1.71 | 0.167 | -- | -0.0306 | 9.79 | 9.6 | 29 | -- | -- |
| 117.12 | 0.504 | 3.08 | -0.225 | 0.126 | 5.97 | -- | 19.4 | -0.0253 | 10.8 | 9.382 | 31 | -- | -- |
| 119.09 | 0.508 | 3.05 | -0.373 | 0.124 | 1.58 | -- | -- | -0.0265 | 9.51 | 9.592 | 31 | -- | -- |
| 118.18 | 0.506 | 3.08 | -0.218 | -- | 6.3 | -- | 20.7 | -0.0202 | -- | 9.381 | 31 | -- | -- |
| 124.99 | 0.524 | 3.04 | -0.404 | 0.148 | -- | 0.144 | -- | -0.0374 | 11.7 | -- | -- | -- | -- |
| 125.08 | 0.524 | 3.04 | -0.398 | 0.148 | -- | -- | -- | -0.0366 | 11.8 | -- | -- | -- | -- |
| 120.03 | 0.51 | 3.04 | -0.352 | -- | 1.73 | -- | -- | -0.0225 | -- | 9.6 | 31 | -- | -- |
| 122.06 | 0.515 | 3.03 | -- | 0.128 | 1.82 | -- | -- | 0.0209 | 11 | 9.6 | 31 | -- | -- |
| 126.45 | 0.525 | 3.05 | -0.403 | -- | -- | -- | -- | -0.0385 | -- | -- | -- | -- | -- |
| 129.26 | 0.532 | 3.03 | -- | 0.153 | -- | -- | -- | 0.00774 | 12 | -- | -- | -- | -- |
| 123.26 | 0.517 | 3.03 | -- | -- | 1.85 | -- | -- | 0.0205 | -- | 9.6 | 31 | -- | -- |
| 130.73 | 0.534 | 3.04 | -- | -- | -- | -- | -- | 0.00615 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.42 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 1 |
| 3 | 110.62 | radiation | 1 | 90 | < th | dose independent | rect. | 10 | 1 |
| 5 | 110.62 | radiation | 1 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 7 | 110.74 | radiation | 20 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 9 | 110.80 | radiation | 1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 11 | 110.80 | radiation | 1 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 13 | 110.91 | radiation | 10 | 10 | < th | dose dependent | rect. | 10 | 2 |
| 16 | 112.09 | radiation | 1 | 10 | < th | dose independent | rect. | 11 | 1 |
| 74 | 117.45 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 81 | 117.94 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 15 |
| 90 | 117.97 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 11 |
| 94 | 117.98 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 8 |
| 95 | 117.99 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 102 | 118.04 | wind | 9 | 30 | > th | dose dependent | sin | 19 | NA |
| 105 | 118.11 | wind | 9 | 30 | > th | dose dependent | rect. | 21 | 22 |
| 109 | 118.15 | wind | 9 | 30 | > th | dose dependent | no | NA | NA |
| 125 | 118.15 | wind | 9 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 150 | 118.15 | wind | 9 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 156 | 118.16 | wind | 9 | 30 | > th | dose dependent | rect. | 1 | 18 |
| 258 | 118.29 | wind | 9 | 90 | > th | dose independent | sin | 15 | NA |
| 260 | 118.37 | wind | 9 | 90 | > th | dose independent | rect. | 11 | 15 |
| 269 | 118.39 | wind | 9 | 90 | > th | dose independent | rect. | 11 | 12 |
| 273 | 118.42 | radiation | 20 | 10 | < th | dose dependent | rect. | 20 | 17 |
| 281 | 118.51 | wind | 9 | 90 | < th | dose independent | sin | 15 | NA |
| 284 | 118.54 | radiation | 20 | 10 | < th | dose independent | rect. | 10 | 3 |
| 286 | 118.55 | wind | 9 | 90 | > th | dose independent | rect. | 11 | 7 |
| 311 | 118.96 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 1 |
| 333 | 119.22 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 10 |
| 341 | 119.22 | wind | 7 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 346 | 119.25 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 7 |
| 350 | 119.28 | radiation | 20 | 10 | < th | dose dependent | rect. | 20 | 21 |
| 361 | 119.37 | wind | 7 | 10 | > th | dose independent | rect. | 17 | 1 |
| 364 | 119.39 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 3 |
| 368 | 119.42 | wind | 9 | 90 | > th | dose dependent | sin | 12 | NA |
| 384 | 119.44 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 5 |
| 393 | 119.47 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 10 |
| 411 | 119.49 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 427 | 119.57 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 21 |
| 475 | 119.66 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 490 | 119.68 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 5 |
| 510 | 119.70 | wind | 9 | 30 | < th | dose independent | no | NA | NA |
| 514 | 119.71 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 534 | 119.74 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 5 |
| 638 | 119.78 | wind | 9 | 30 | > th | dose independent | rect. | 1 | 17 |
| 775 | 119.88 | humidity | 90 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 784 | 119.92 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 830 | 119.99 | wind | 9 | 30 | > th | dose independent | no | NA | NA |
| 912 | 120.01 | humidity | 50 | 10 | > th | dose dependent | rect. | 20 | 21 |