BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0142100 Os02g0142100|AK069573
         (141 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0142100  Conserved hypothetical protein                      231   2e-61
Os10g0331000                                                       68   2e-12

>Os02g0142100 Conserved hypothetical protein
          Length = 141

 Score =  231 bits (588), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/129 (86%), Positives = 111/129 (86%)

Query: 13  LFCFNVSEKLSKQNYQLWCAQVLTAIRGARLKGHLKGKTVTPAAHXXXXXXXXXXXXXXX 72
           LFCFNVSEKLSKQNYQLWCAQVLTAIRGARLKGHLKGKTVTPAAH               
Sbjct: 13  LFCFNVSEKLSKQNYQLWCAQVLTAIRGARLKGHLKGKTVTPAAHIEAEKKEDDKTKIKI 72

Query: 73  XXXNPAYERVVCRGSTGSRLPLFIAVTEYIIPGCHGDHSDRCLEDDPGDVQLQGDSRALP 132
              NPAYERVVCRGSTGSRLPLFIAVTEYIIPGCHGDHSDRCLEDDPGDVQLQGDSRALP
Sbjct: 73  MIDNPAYERVVCRGSTGSRLPLFIAVTEYIIPGCHGDHSDRCLEDDPGDVQLQGDSRALP 132

Query: 133 QRAAISHQH 141
           QRAAISHQH
Sbjct: 133 QRAAISHQH 141



>Os10g0331000 
          Length = 183

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 37/57 (64%)

Query: 1  MAXXXXXXXXXXLFCFNVSEKLSKQNYQLWCAQVLTAIRGARLKGHLKGKTVTPAAH 57
          MA          LF   VSEKLSKQN+ LW AQVLT IRGARL+GH+ G+T  PAA 
Sbjct: 1  MASSSSTAVSNPLFGVQVSEKLSKQNHALWRAQVLTVIRGARLEGHITGETAVPAAQ 57



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,003,544
Number of extensions: 134778
Number of successful extensions: 203
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 2
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)