BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0141500 Os02g0141500|AK099428
(228 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0141500 Conserved hypothetical protein 466 e-132
Os01g0854200 166 2e-41
Os02g0778100 164 3e-41
>Os02g0141500 Conserved hypothetical protein
Length = 228
Score = 466 bits (1198), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MMVGFMGKRKELDQVVDGLSDFSLSGPAAKSRRLDIGLPPIMEEETPGPSMPFGHEMLGE 60
MMVGFMGKRKELDQVVDGLSDFSLSGPAAKSRRLDIGLPPIMEEETPGPSMPFGHEMLGE
Sbjct: 1 MMVGFMGKRKELDQVVDGLSDFSLSGPAAKSRRLDIGLPPIMEEETPGPSMPFGHEMLGE 60
Query: 61 EIHSVVSMPIIEDMLGGAMESHPSSEDKALVLYKSVDNTACIGPGTSNPSIIISPDLIRS 120
EIHSVVSMPIIEDMLGGAMESHPSSEDKALVLYKSVDNTACIGPGTSNPSIIISPDLIRS
Sbjct: 61 EIHSVVSMPIIEDMLGGAMESHPSSEDKALVLYKSVDNTACIGPGTSNPSIIISPDLIRS 120
Query: 121 LKNQAFMQRNFHGLEDKSPGCSNFLALVPWTPPQIATVSNWSASDSEKREFFEVPMESDE 180
LKNQAFMQRNFHGLEDKSPGCSNFLALVPWTPPQIATVSNWSASDSEKREFFEVPMESDE
Sbjct: 121 LKNQAFMQRNFHGLEDKSPGCSNFLALVPWTPPQIATVSNWSASDSEKREFFEVPMESDE 180
Query: 181 TEVDSMDVEESPEANVAAIDGESLHQWQQHCMTPSSLPNPSAPVMWSR 228
TEVDSMDVEESPEANVAAIDGESLHQWQQHCMTPSSLPNPSAPVMWSR
Sbjct: 181 TEVDSMDVEESPEANVAAIDGESLHQWQQHCMTPSSLPNPSAPVMWSR 228
>Os01g0854200
Length = 205
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/82 (92%), Positives = 79/82 (96%)
Query: 126 FMQRNFHGLEDKSPGCSNFLALVPWTPPQIATVSNWSASDSEKREFFEVPMESDETEVDS 185
FMQRN+HGLEDKSPGCSNFLAL PWTPPQIAT SNWS+SDSEKREFFEVPMES+ETEVDS
Sbjct: 82 FMQRNYHGLEDKSPGCSNFLALAPWTPPQIATASNWSSSDSEKREFFEVPMESNETEVDS 141
Query: 186 MDVEESPEANVAAIDGESLHQW 207
MDVEESPEAN AAIDGESLHQW
Sbjct: 142 MDVEESPEANAAAIDGESLHQW 163
>Os02g0778100
Length = 132
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/86 (89%), Positives = 81/86 (94%)
Query: 122 KNQAFMQRNFHGLEDKSPGCSNFLALVPWTPPQIATVSNWSASDSEKREFFEVPMESDET 181
++ FMQRN+HGLEDKSPGCSNFLALVPWTPPQIAT SNWS+SDSEKREFFEVPMESDET
Sbjct: 21 RSPVFMQRNYHGLEDKSPGCSNFLALVPWTPPQIATASNWSSSDSEKREFFEVPMESDET 80
Query: 182 EVDSMDVEESPEANVAAIDGESLHQW 207
EVDSMDVEES EAN AAIDGESLHQW
Sbjct: 81 EVDSMDVEESLEANAAAIDGESLHQW 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,383,453
Number of extensions: 415352
Number of successful extensions: 766
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 3
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)