BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0140300 Os02g0140300|J100056H05
         (193 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0140300  Molybdopterin biosynthesis MoaE family protein      303   5e-83

>Os02g0140300 Molybdopterin biosynthesis MoaE family protein
          Length = 193

 Score =  303 bits (776), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 156/193 (80%), Positives = 156/193 (80%)

Query: 1   MASDELPVAAAATEEEDLVEILDEGSGRLDIARYVDHVRDLAAGAIATFEGTTRDSFEGR 60
           MASDELPVAAAATEEEDLVEILDEGSGRLDIARYVDHVRDLAAGAIATFEGTTRDSFEGR
Sbjct: 1   MASDELPVAAAATEEEDLVEILDEGSGRLDIARYVDHVRDLAAGAIATFEGTTRDSFEGR 60

Query: 61  RVVELRYEAYGXXXXXXXXXXXXXXXXXHSLRRLAVAHRLGTVPAGEASVFVAASAVHRA 120
           RVVELRYEAYG                 HSLRRLAVAHRLGTVPAGEASVFVAASAVHRA
Sbjct: 61  RVVELRYEAYGAMARRRLAAILREARAAHSLRRLAVAHRLGTVPAGEASVFVAASAVHRA 120

Query: 121 DAMEACRYVIDEVKASVPIWKKEVYDDGEVWKENREFLXXXXXXXXXXXXXXXXXXXXKG 180
           DAMEACRYVIDEVKASVPIWKKEVYDDGEVWKENREFL                    KG
Sbjct: 121 DAMEACRYVIDEVKASVPIWKKEVYDDGEVWKENREFLDRTTTDGTTASSPAPATRPAKG 180

Query: 181 GGCCGRKVRVNES 193
           GGCCGRKVRVNES
Sbjct: 181 GGCCGRKVRVNES 193



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,742,170
Number of extensions: 197533
Number of successful extensions: 557
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)