BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0137000 Os02g0137000|AK111719
         (754 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0137000  WD40-like domain containing protein                1460   0.0  

>Os02g0137000 WD40-like domain containing protein
          Length = 754

 Score = 1460 bits (3780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/754 (96%), Positives = 725/754 (96%)

Query: 1   DSISVTNVGKGPGTSNHSDAGISNSRSNGLDFTVKINLMGQLHLLSSTVTTLAVPSPSLL 60
           DSISVTNVGKGPGTSNHSDAGISNSRSNGLDFTVKINLMGQLHLLSSTVTTLAVPSPSLL
Sbjct: 1   DSISVTNVGKGPGTSNHSDAGISNSRSNGLDFTVKINLMGQLHLLSSTVTTLAVPSPSLL 60

Query: 61  ATVARGGNNPAPAVPLVAVGTQNGTIEIVDVLANAISVSFAVHSSTVRGLRWLGNSRLVS 120
           ATVARGGNNPAPAVPLVAVGTQNGTIEIVDVLANAISVSFAVHSSTVRGLRWLGNSRLVS
Sbjct: 61  ATVARGGNNPAPAVPLVAVGTQNGTIEIVDVLANAISVSFAVHSSTVRGLRWLGNSRLVS 120

Query: 121 FSYSQANDKTGGYNNKLIITCLRSGLNRSFRVLQKPERAPIRALRASSSGRYLLILFRDA 180
           FSYSQANDKTGGYNNKLIITCLRSGLNRSFRVLQKPERAPIRALRASSSGRYLLILFRDA
Sbjct: 121 FSYSQANDKTGGYNNKLIITCLRSGLNRSFRVLQKPERAPIRALRASSSGRYLLILFRDA 180

Query: 181 PVEVWAMTKNPMMLRSLALPFTVLEWTLPSAPRPGQNAASKQSSTSKERSAEATGAESTD 240
           PVEVWAMTKNPMMLRSLALPFTVLEWTLPSAPRPGQNAASKQSSTSKERSAEATGAESTD
Sbjct: 181 PVEVWAMTKNPMMLRSLALPFTVLEWTLPSAPRPGQNAASKQSSTSKERSAEATGAESTD 240

Query: 241 ETSESFAFALVNGALGVFEVHGRRIRDFRPKWPSSSFASADGLVTAMAYRLPHVVMGDRS 300
           ETSESFAFALVNGALGVFEVHGRRIRDFRPKWPSSSFASADGLVTAMAYRLPHVVMGDRS
Sbjct: 241 ETSESFAFALVNGALGVFEVHGRRIRDFRPKWPSSSFASADGLVTAMAYRLPHVVMGDRS 300

Query: 301 GNIRWWDVTTGLSSSFSTHREGIRRIKFSPVVHGDRSRGRIAVLFYDNTFSIFDLDSADP 360
           GNIRWWDVTTGLSSSFSTHREGIRRIKFSPVVHGDRSRGRIAVLFYDNTFSIFDLDSADP
Sbjct: 301 GNIRWWDVTTGLSSSFSTHREGIRRIKFSPVVHGDRSRGRIAVLFYDNTFSIFDLDSADP 360

Query: 361 LANALLQPQSPGTLVLELDWLSTRTKKDEPLVLCIAGADSSFRLIEVNIDPRASSTLRPV 420
           LANALLQPQSPGTLVLELDWLSTRTKKDEPLVLCIAGADSSFRLIEVNIDPRASSTLRPV
Sbjct: 361 LANALLQPQSPGTLVLELDWLSTRTKKDEPLVLCIAGADSSFRLIEVNIDPRASSTLRPV 420

Query: 421 TTRERFRPMPLCLPILFPTAHALALRMILQLGVKPSWFECNSGDKLASSSFKEAPATFGD 480
           TTRERFRPMPLCLPILFPTAHALALRMILQLGVKPSWFECNSGDKLASSSFKEAPATFGD
Sbjct: 421 TTRERFRPMPLCLPILFPTAHALALRMILQLGVKPSWFECNSGDKLASSSFKEAPATFGD 480

Query: 481 LRSYMIETTLPPIGDSVVAELLLKVLEPYRKDGFILDDGRAKLYSAIVNKGTCARFAFAA 540
           LRSYMIETTLPPIGDSVVAELLLKVLEPYRKDGFILDDGRAKLYSAIVNKGTCARFAFAA
Sbjct: 481 LRSYMIETTLPPIGDSVVAELLLKVLEPYRKDGFILDDGRAKLYSAIVNKGTCARFAFAA 540

Query: 541 AIFGDIQEALFWLQLPQALHHYLDXXXXXXXXXXXXXXVHYHSEQASTLNRASSSTERSA 600
           AIFGDIQEALFWLQLPQALHHYLD              VHYHSEQASTLNRASSSTERSA
Sbjct: 541 AIFGDIQEALFWLQLPQALHHYLDKSTSRSSEKGSESSVHYHSEQASTLNRASSSTERSA 600

Query: 601 PENMAKVAENCGQLSSMAFRQEQLWFNANERIPWHEKLDGEEALQKRVHELVSLGNLETA 660
           PENMAKVAENCGQLSSMAFRQEQLWFNANERIPWHEKLDGEEALQKRVHELVSLGNLETA
Sbjct: 601 PENMAKVAENCGQLSSMAFRQEQLWFNANERIPWHEKLDGEEALQKRVHELVSLGNLETA 660

Query: 661 VSLLLSTPPEGSNFYPNXXXXXXXXXXXXXXXHELAVKVVAANMVRTDKSLSGTHLLCAV 720
           VSLLLSTPPEGSNFYPN               HELAVKVVAANMVRTDKSLSGTHLLCAV
Sbjct: 661 VSLLLSTPPEGSNFYPNALRAVVLSSAVSRSLHELAVKVVAANMVRTDKSLSGTHLLCAV 720

Query: 721 GRYQEACSQLQDAGCWVDAATLAASHLHGSDYAR 754
           GRYQEACSQLQDAGCWVDAATLAASHLHGSDYAR
Sbjct: 721 GRYQEACSQLQDAGCWVDAATLAASHLHGSDYAR 754



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,345,507
Number of extensions: 982958
Number of successful extensions: 3212
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3212
Number of HSP's successfully gapped: 1
Length of query: 754
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 646
Effective length of database: 11,396,689
Effective search space: 7362261094
Effective search space used: 7362261094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)