BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0134400 Os02g0134400|AK072394
(645 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0134400 L-aspartate oxidase family protein 1345 0.0
AK107682 256 4e-68
Os07g0134800 Similar to Succinate dehydrogenase [ubiquinone... 247 2e-65
>Os02g0134400 L-aspartate oxidase family protein
Length = 645
Score = 1345 bits (3480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/645 (100%), Positives = 645/645 (100%)
Query: 1 MAALMNGFGSLQCKATVHVEKGHMQASGMAFFSPVNRCAQVHISSIPHFIGAKSVSASQL 60
MAALMNGFGSLQCKATVHVEKGHMQASGMAFFSPVNRCAQVHISSIPHFIGAKSVSASQL
Sbjct: 1 MAALMNGFGSLQCKATVHVEKGHMQASGMAFFSPVNRCAQVHISSIPHFIGAKSVSASQL 60
Query: 61 RMRHKVGSIRASAASCLQDETTKYFDFVVIGSGVAGLRYALEVSKYGSVAIITKAEPHES 120
RMRHKVGSIRASAASCLQDETTKYFDFVVIGSGVAGLRYALEVSKYGSVAIITKAEPHES
Sbjct: 61 RMRHKVGSIRASAASCLQDETTKYFDFVVIGSGVAGLRYALEVSKYGSVAIITKAEPHES 120
Query: 121 NTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDEETVRVVCTEGPERVKELIAMGASF 180
NTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDEETVRVVCTEGPERVKELIAMGASF
Sbjct: 121 NTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDEETVRVVCTEGPERVKELIAMGASF 180
Query: 181 DHGEDGRLHLAREGGHSHNRIVHSADMTGREIERALLQAVDNDDNISLFGHHFAIDLLTC 240
DHGEDGRLHLAREGGHSHNRIVHSADMTGREIERALLQAVDNDDNISLFGHHFAIDLLTC
Sbjct: 181 DHGEDGRLHLAREGGHSHNRIVHSADMTGREIERALLQAVDNDDNISLFGHHFAIDLLTC 240
Query: 241 QSNGEIYCYGVDSLDAETQKAIRFISKVTLLASGGVGHIYPSTTNPPVATGDGIAMSHRA 300
QSNGEIYCYGVDSLDAETQKAIRFISKVTLLASGGVGHIYPSTTNPPVATGDGIAMSHRA
Sbjct: 241 QSNGEIYCYGVDSLDAETQKAIRFISKVTLLASGGVGHIYPSTTNPPVATGDGIAMSHRA 300
Query: 301 QAVISNMEFVQFHPTALSDEGLPIKPATRRENAFLITEAVRGDGGILYNQSMERFMTSYD 360
QAVISNMEFVQFHPTALSDEGLPIKPATRRENAFLITEAVRGDGGILYNQSMERFMTSYD
Sbjct: 301 QAVISNMEFVQFHPTALSDEGLPIKPATRRENAFLITEAVRGDGGILYNQSMERFMTSYD 360
Query: 361 DRAELAPRDVVARSIDDQLKKRGEKYVLLDISHKPREKVLAHFPNIAAECLRHGLDITQQ 420
DRAELAPRDVVARSIDDQLKKRGEKYVLLDISHKPREKVLAHFPNIAAECLRHGLDITQQ
Sbjct: 361 DRAELAPRDVVARSIDDQLKKRGEKYVLLDISHKPREKVLAHFPNIAAECLRHGLDITQQ 420
Query: 421 PIPVVPAAHYMCGGVRAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 480
PIPVVPAAHYMCGGVRAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVFARRA
Sbjct: 421 PIPVVPAAHYMCGGVRAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 480
Query: 481 VQPSIDHMVDADVDPSFAKKWARPVLSVSLRDSILSDIIEKTKQARMELQSIMWEYVGIV 540
VQPSIDHMVDADVDPSFAKKWARPVLSVSLRDSILSDIIEKTKQARMELQSIMWEYVGIV
Sbjct: 481 VQPSIDHMVDADVDPSFAKKWARPVLSVSLRDSILSDIIEKTKQARMELQSIMWEYVGIV 540
Query: 541 RSTNRLKHAEWKISDLESEWEEFLFRRGWKPTMVGVETCEMRNLFCCAKLVVKSALARHE 600
RSTNRLKHAEWKISDLESEWEEFLFRRGWKPTMVGVETCEMRNLFCCAKLVVKSALARHE
Sbjct: 541 RSTNRLKHAEWKISDLESEWEEFLFRRGWKPTMVGVETCEMRNLFCCAKLVVKSALARHE 600
Query: 601 SRGLHFTEDFPYLEESKRKPTVIFPTHIQELTWSSKPLQKQLQCK 645
SRGLHFTEDFPYLEESKRKPTVIFPTHIQELTWSSKPLQKQLQCK
Sbjct: 601 SRGLHFTEDFPYLEESKRKPTVIFPTHIQELTWSSKPLQKQLQCK 645
>AK107682
Length = 646
Score = 256 bits (653), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 218/660 (33%), Positives = 319/660 (48%), Gaps = 85/660 (12%)
Query: 24 MQASGMAFFSPVNRCA-QVHISSIPHFIGAKSVSASQLRMRHKVGSIRASAASCLQDETT 82
M +SGM F +R A Q+ + + AK + G +RA AS L +
Sbjct: 1 MYSSGMRQFGAASRLARQLQVRNFSRTAPAKKIITPN-------GPLRAKEASPLLN--N 51
Query: 83 KY------FDFVVIGSGVAGLRYALEVSKYG-SVAIITKAEPHESNTNYAQGGVSAVLCP 135
KY +D +V+G+G AGLR A +++ G + A I+K P S+T AQGG++A L
Sbjct: 52 KYPIIDHEYDALVVGAGGAGLRAAFGLAEAGFNTACISKLFPTRSHTVAAQGGINAALGN 111
Query: 136 --SDSVESHMQDTIVAGAYLCDEETVRVVCTEGPERVKELIAMGASFDHGEDGRLHLARE 193
D HM DT+ +L D++ + E P V EL G F ++G+++
Sbjct: 112 MHKDDWRWHMYDTVKGSDWLGDQDAIHYRTREAPASVIELENYGCPFSRTDEGKIYQRAF 171
Query: 194 GGHSHN--------RIVHSADMTGREIERALL-QAVDNDDNISLFGHHFAIDLLTCQSNG 244
GG S + R +AD TG + L Q++ + N + F FAIDL+ +G
Sbjct: 172 GGQSQDYGKGGQAYRCCAAADRTGHALLHTLYGQSLRH--NTNYFIEFFAIDLI--MEDG 227
Query: 245 EIYCYGVDSLDAETQKAIRFISKVTLLASGGVGHIYPSTTNPPVATGDGIAMSHRAQAVI 304
E C GV + + E RF S T+LA+GG G Y S T+ TGDG+AM RA
Sbjct: 228 E--CKGVIAYNQEDGTLHRFRSHHTVLATGGYGRAYFSCTSAHTCTGDGMAMVARAGLPN 285
Query: 305 SNMEFVQFHPTALSDEGLPIKPATRRENAFLITEAVRGDGGILYNQSMERFMTSYDDRA- 363
+MEFVQFHPT + G LITE RG+GG L N ERFM Y A
Sbjct: 286 QDMEFVQFHPTGIYGAGC------------LITEGSRGEGGYLLNSEGERFMERYAPTAK 333
Query: 364 ELAPRDVVARSIDDQLKK-RG----EKYVLLDISHKPREKVLAHFPNIA-AECLRHGLDI 417
+LA RDVV+RS+ ++++ RG + ++ L +SH P E + P I+ + G+D+
Sbjct: 334 DLASRDVVSRSMTMEIREGRGVGPDKDHIYLQLSHLPAEVLHERLPGISETASIFAGVDV 393
Query: 418 TQQPIPVVPAAHYMCGGVRAGLQGET----------NVKGLYVAGEVACTGLHGANRLAS 467
T+QPIPV+P HY GG+ GE V GL+ GE AC +HGANRL +
Sbjct: 394 TKQPIPVLPTVHYNMGGIPTKYTGEVLTVDEAGKDKVVPGLFACGEAACVSVHGANRLGA 453
Query: 468 NSLLEALVFARRAVQPSIDHMVDADVDPSFAKK---WARPVLSVSLRDSI-LSDIIEKTK 523
NSLL+ +VF R ++ H + + P K ++ D I +D + T
Sbjct: 454 NSLLDLIVFGR-----AVSHTIRDNFSPGKPHKELDAGAGAEAIQTVDQIRTADGPKSTN 508
Query: 524 QARMELQSIMWEYVGIVRSTNRLKHAEWKISDLESEWEEFLFRRG---WKPTMVGVETCE 580
+ R +Q +M V + R+ L+ KI++++ + + + W + VET E
Sbjct: 509 EVRSAMQKVMQTDVSVFRTEESLQEGVKKINEVDQMFSQVGTKDRSMIWNSDL--VETLE 566
Query: 581 MRNLFCCAKLVVKSALARHESRGLHFTEDFPYLEESKRKPTVIFPTHIQELTWSSKPLQK 640
+RNL CA +SA R ESRG H ED+P ++ + H L+W KP K
Sbjct: 567 LRNLLTCAVQTAESAANRKESRGAHAREDYPDRDDEN------WMKHT--LSWQKKPHGK 618
>Os07g0134800 Similar to Succinate dehydrogenase [ubiquinone] flavoprotein
subunit, mitochondrial (EC 1.3.5.1) (FP) (Flavoprotein
subunit of complex II)
Length = 630
Score = 247 bits (631), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 187/551 (33%), Positives = 269/551 (48%), Gaps = 74/551 (13%)
Query: 103 VSKYG-SVAIITKAEPHESNTNYAQGGVSAVL--CPSDSVESHMQDTIVAGAYLCDEETV 159
+S++G + A ITK P S+T AQGG++A L D HM DT+ +L D++++
Sbjct: 64 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDSI 123
Query: 160 RVVCTEGPERVKELIAMGASFDHGEDGRLHLAREGGHSHN--------RIVHSADMTGRE 211
+ +C E P+ V EL G F EDG+++ GG S + R +AD TG
Sbjct: 124 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHA 183
Query: 212 IERALL-QAVDNDDNISLFGHHFAIDLLTCQSNGEIYCYGVDSLDAETQKAIRFISKVTL 270
+ L QA+ + N F +FA+DL+ + E C GV +L+ E RF + T+
Sbjct: 184 MLHTLYGQAMKH--NTQFFVEYFALDLIM---DSEGTCQGVIALNMEDGTLHRFRATNTI 238
Query: 271 LASGGVGHIYPSTTNPPVATGDGIAMSHRAQAVISNMEFVQFHPTALSDEGLPIKPATRR 330
LA+GG G Y S T+ TGDG AM RA + ++EFVQFHPT + G
Sbjct: 239 LATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGC-------- 290
Query: 331 ENAFLITEAVRGDGGILYNQSMERFMTSYDDRA-ELAPRDVVARSIDDQLKK-RG----E 384
LITE RG+GGIL N ERFM Y A +LA RDVV+RS+ ++++ RG +
Sbjct: 291 ----LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLK 346
Query: 385 KYVLLDISHKPREKVLAHFPNIA-AECLRHGLDITQQPIPVVPAAHYMCGGVRAGLQGE- 442
++ L ++H P E + P I+ + G+D+T++PIPV+P HY GG+ GE
Sbjct: 347 DHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEV 406
Query: 443 ---------TNVKGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHMVDADV 493
+ V GL AGE AC +HGANRL +NSLL+ +VF R + +
Sbjct: 407 VTMKGDNPDSVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAETAKPGEK 466
Query: 494 DPSFAKKWARPVLSV--SLRDSILSDIIEKTKQARMELQSIMWEYVGIVRSTNRLKHA-- 549
K ++ LR++ S T + R+ +Q +M + R+ L+
Sbjct: 467 QKPLQKSAGEKTIAWLDKLRNANGS---LPTSKIRLNMQRVMQNNAAVFRTQETLEEGCK 523
Query: 550 ----EW------KISDLESEWEEFLFRRGWKPTMVGVETCEMRNLFCCAKLVVKSALARH 599
W KISD W L +ET E+ NL A + + SA AR
Sbjct: 524 LITKAWESYHDVKISDRSLIWNSDL-----------IETIELENLLINACITMHSAEARK 572
Query: 600 ESRGLHFTEDF 610
ESRG H EDF
Sbjct: 573 ESRGAHAREDF 583
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,101,049
Number of extensions: 932835
Number of successful extensions: 2247
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2234
Number of HSP's successfully gapped: 3
Length of query: 645
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 538
Effective length of database: 11,448,903
Effective search space: 6159509814
Effective search space used: 6159509814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)