BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0133400 Os02g0133400|Os02g0133400
(1285 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0133400 SMC protein, N-terminal domain containing protein 2347 0.0
Os02g0133300 Similar to Structural maintenance of chromosom... 1056 0.0
Os01g0904400 Similar to Chromosome assembly protein homolog 70 1e-11
>Os02g0133400 SMC protein, N-terminal domain containing protein
Length = 1285
Score = 2347 bits (6082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1158/1285 (90%), Positives = 1158/1285 (90%)
Query: 1 MYGMLFMLLIVEKKVVRLRRTVASKKDEYYLDGKHISKTEVMNLLENAGFSRSNPYYVVQ 60
MYGMLFMLLIVEKKVVRLRRTVASKKDEYYLDGKHISKTEVMNLLENAGFSRSNPYYVVQ
Sbjct: 1 MYGMLFMLLIVEKKVVRLRRTVASKKDEYYLDGKHISKTEVMNLLENAGFSRSNPYYVVQ 60
Query: 61 QGKGTSCKWTLIHDLLAANKRKQIDQVVHYXXXXXXXXXXXXXXXXXYQQLDKQRRSLEY 120
QGKGTSCKWTLIHDLLAANKRKQIDQVVHY YQQLDKQRRSLEY
Sbjct: 61 QGKGTSCKWTLIHDLLAANKRKQIDQVVHYLEERLRELDEEKEEMKKYQQLDKQRRSLEY 120
Query: 121 TILDHELNDTRNELALMDDNRRKISERMSHADNEVVDVREKIRSFEKEIKFSTKGINENK 180
TILDHELNDTRNELALMDDNRRKISERMSHADNEVVDVREKIRSFEKEIKFSTKGINENK
Sbjct: 121 TILDHELNDTRNELALMDDNRRKISERMSHADNEVVDVREKIRSFEKEIKFSTKGINENK 180
Query: 181 AQKEDVEKKCTEVLKVVAQIELDLRDIKDRILNEKLAKDEAARDSQSVRMESERSKSELA 240
AQKEDVEKKCTEVLKVVAQIELDLRDIKDRILNEKLAKDEAARDSQSVRMESERSKSELA
Sbjct: 181 AQKEDVEKKCTEVLKVVAQIELDLRDIKDRILNEKLAKDEAARDSQSVRMESERSKSELA 240
Query: 241 ETSKVHQTKLREEEEISKSIMDRQKQLSILYQKQGRATQFANKAARDKWLQKEIDDLECV 300
ETSKVHQTKLREEEEISKSIMDRQKQLSILYQKQGRATQFANKAARDKWLQKEIDDLECV
Sbjct: 241 ETSKVHQTKLREEEEISKSIMDRQKQLSILYQKQGRATQFANKAARDKWLQKEIDDLECV 300
Query: 301 LLSNRKQGGLLQEEIQKLKDKINNLNSYFEFYESESNKLESALAKKHSDYNDLRKQRDKL 360
LLSNRKQGGLLQEEIQKLKDKINNLNSYFEFYESESNKLESALAKKHSDYNDLRKQRDKL
Sbjct: 301 LLSNRKQGGLLQEEIQKLKDKINNLNSYFEFYESESNKLESALAKKHSDYNDLRKQRDKL 360
Query: 361 QEERNYEANVTAEKDRLKENLVNAKEKLGNATPGDIIRGLNCVSRITMEHGITGVVGPIL 420
QEERNYEANVTAEKDRLKENLVNAKEKLGNATPGDIIRGLNCVSRITMEHGITGVVGPIL
Sbjct: 361 QEERNYEANVTAEKDRLKENLVNAKEKLGNATPGDIIRGLNCVSRITMEHGITGVVGPIL 420
Query: 421 ELIDCDEKLFTAVEVTAGNSLFHVVVENDDISTKIIQVLTREKGGRVTFIPLNRVKVPDV 480
ELIDCDEKLFTAVEVTAGNSLFHVVVENDDISTKIIQVLTREKGGRVTFIPLNRVKVPDV
Sbjct: 421 ELIDCDEKLFTAVEVTAGNSLFHVVVENDDISTKIIQVLTREKGGRVTFIPLNRVKVPDV 480
Query: 481 SYPRSDDFVPLLERLECNKANHRRAFEQVFGRTVICKDLETATKVARDNGLNCITLDGDQ 540
SYPRSDDFVPLLERLECNKANHRRAFEQVFGRTVICKDLETATKVARDNGLNCITLDGDQ
Sbjct: 481 SYPRSDDFVPLLERLECNKANHRRAFEQVFGRTVICKDLETATKVARDNGLNCITLDGDQ 540
Query: 541 VARKGHMTGGFHDYRCSKLKFVKTIKNNMKAIEEKEEHLKNVERNLSDILSPCLHDADKK 600
VARKGHMTGGFHDYRCSKLKFVKTIKNNMKAIEEKEEHLKNVERNLSDILSPCLHDADKK
Sbjct: 541 VARKGHMTGGFHDYRCSKLKFVKTIKNNMKAIEEKEEHLKNVERNLSDILSPCLHDADKK 600
Query: 601 MTDLVTKQQQMDAESDHAKSELEHFKVGIASTMKQIGSLEKALGKKIETRKEELKANLST 660
MTDLVTKQQQMDAESDHAKSELEHFKVGIASTMKQIGSLEKALGKKIETRKEELKANLST
Sbjct: 601 MTDLVTKQQQMDAESDHAKSELEHFKVGIASTMKQIGSLEKALGKKIETRKEELKANLST 660
Query: 661 NLMRRQKEFEAVISSADSKTLSLEAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIKI 720
NLMRRQKEFEAVISSADSKTLSLEAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIKI
Sbjct: 661 NLMRRQKEFEAVISSADSKTLSLEAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIKI 720
Query: 721 EELKRQRDNLKTLEANLDQTVRDGAKDLEQLMSSRSMHLAKQEECGGTGPRPPGVEEGDP 780
EELKRQRDNLKTLEANLDQTVRDGAKDLEQLMSSRSMHLAKQEECGGTGPRPPGVEEGDP
Sbjct: 721 EELKRQRDNLKTLEANLDQTVRDGAKDLEQLMSSRSMHLAKQEECGGTGPRPPGVEEGDP 780
Query: 781 CEAAASEGGCSTSEWDGATTGVEDGSPPATTVGQGTETIXXXXXXXXXXXXXXXXXXXXX 840
CEAAASEGGCSTSEWDGATTGVEDGSPPATTVGQGTETI
Sbjct: 781 CEAAASEGGCSTSEWDGATTGVEDGSPPATTVGQGTETISSSRRKSREAEEGEAAKVAEK 840
Query: 841 XXTSVGNFMLNGGGWVPIMEVAGGHEPLGPICGWQGGMEEHGAGEAKGSDEXXXXXXXXX 900
TSVGNFMLNGGGWVPIMEVAGGHEPLGPICGWQGGMEEHGAGEAKGSDE
Sbjct: 841 GKTSVGNFMLNGGGWVPIMEVAGGHEPLGPICGWQGGMEEHGAGEAKGSDEAGCIPGAGG 900
Query: 901 XXXXXXXRLEWSKGGVGLRGRPEDALVAPXXXXXXXXXXXXXXXXLSRGGDALSRGHTFA 960
RLEWSKGGVGLRGRPEDALVAP LSRGGDALSRGHTFA
Sbjct: 901 GVGAAGGRLEWSKGGVGLRGRPEDALVAPSRGTRTSRGARTSLAALSRGGDALSRGHTFA 960
Query: 961 GPGIEAPGNAFXXXXXXXXXXXXXXXXXXXXXXXXFAAGISTDGIFYCLTPLPTDAFETY 1020
GPGIEAPGNAF FAAGISTDGIFYCLTPLPTDAFETY
Sbjct: 961 GPGIEAPGNAFVGAGAAGVVGEAAGGVWEGLLGALFAAGISTDGIFYCLTPLPTDAFETY 1020
Query: 1021 RQKNKRQLQKMLYDCNEQLQQFRHVKKKPLDCVNFTXXXXXXXXXXXXXDAGDQKIRELV 1080
RQKNKRQLQKMLYDCNEQLQQFRHVKKKPLDCVNFT DAGDQKIRELV
Sbjct: 1021 RQKNKRQLQKMLYDCNEQLQQFRHVKKKPLDCVNFTEQREQLERRRAELDAGDQKIRELV 1080
Query: 1081 SILDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXXXXXXPR 1140
SILDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMM PR
Sbjct: 1081 SILDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDAGDEDIDNDEDGPR 1140
Query: 1141 EPDSEDRMEKYIGVKFLREVLEFQVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDP 1200
EPDSEDRMEKYIGVKFLREVLEFQVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDP
Sbjct: 1141 EPDSEDRMEKYIGVKFLREVLEFQVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDP 1200
Query: 1201 APFYLFDEIDAALDTQYRTAVGNMIRRLSDMADTQFIATTFRPEIVKVADKIYGVTYKNR 1260
APFYLFDEIDAALDTQYRTAVGNMIRRLSDMADTQFIATTFRPEIVKVADKIYGVTYKNR
Sbjct: 1201 APFYLFDEIDAALDTQYRTAVGNMIRRLSDMADTQFIATTFRPEIVKVADKIYGVTYKNR 1260
Query: 1261 VSYINVVSKEQALDFIGHDQTQNAI 1285
VSYINVVSKEQALDFIGHDQTQNAI
Sbjct: 1261 VSYINVVSKEQALDFIGHDQTQNAI 1285
>Os02g0133300 Similar to Structural maintenance of chromosome 3 (Fragment)
Length = 1201
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/850 (67%), Positives = 647/850 (76%), Gaps = 105/850 (12%)
Query: 11 VEKKVVRLRRTVASKKDEYYLDGKHISKTEVMNLLENAGFSRSNPYYVVQQGKGTSCKWT 70
V+K+ VRLRRTVASKKDEYYLDGKH+SKTEVMNLLE+AGFSRSNPYYVVQQGK S T
Sbjct: 87 VDKEEVRLRRTVASKKDEYYLDGKHVSKTEVMNLLESAGFSRSNPYYVVQQGKIAS--LT 144
Query: 71 LIHD-----LL----------------------AANKRKQIDQVVHYXXXXXXXXXXXXX 103
L+ D LL NKRKQIDQVVHY
Sbjct: 145 LMKDSERLDLLKEIGGTRVYEDRRRESLKIMQETGNKRKQIDQVVHYLEERLRELDEEKE 204
Query: 104 XXXXYQQLDKQRRSLEYTILDHELNDTRNELALMDDNRRKISERMSHADNEVVDVREKIR 163
YQQLDKQRRSLEYTILDHELN+ RNELA MDDNRRKISERMSHADNEVVDVREK++
Sbjct: 205 ELKKYQQLDKQRRSLEYTILDHELNEARNELASMDDNRRKISERMSHADNEVVDVREKVK 264
Query: 164 SFEKEIKFSTKGINENKAQKEDVEKKCTEVLKVVAQIELDLRDIKDRILNEKLAKDEAAR 223
+F+KEIK+STKGIN+ KAQKE VEKK TE LKVVAQIELDLRDIKDRILNEK AKDEAA+
Sbjct: 265 TFDKEIKYSTKGINDTKAQKEGVEKKRTEALKVVAQIELDLRDIKDRILNEKRAKDEAAK 324
Query: 224 DSQSVRMESERSKSELAETSKVHQTKLREEEEISKSIMDRQKQLSILYQKQGRATQFANK 283
D QSVRMESE+SKSELAE SKVHQ KL+EEEEISKSIMDR+K+LSILYQKQGRATQFANK
Sbjct: 325 DLQSVRMESEKSKSELAEISKVHQAKLKEEEEISKSIMDREKRLSILYQKQGRATQFANK 384
Query: 284 AARDKWLQKEIDDLECVLLSNRKQGGLLQEEIQKLKDKINNLNSYFEFYESESNKLESAL 343
AARDKWLQKEIDDLE VLLSNRKQ GLLQEEIQKLKD+INNLNSY E +SES+KLESAL
Sbjct: 385 AARDKWLQKEIDDLERVLLSNRKQEGLLQEEIQKLKDEINNLNSYIESRKSESSKLESAL 444
Query: 344 AKKHSDYNDLRKQRDKLQEERNY----EANVTAEKDRLKENLVNAKEKLGNATPGDIIRG 399
AKKH+DYNDLRKQRD+LQEER EA+VTAE DRLK++LV A++ L +ATPGDI RG
Sbjct: 445 AKKHNDYNDLRKQRDELQEERKSFWKEEADVTAEIDRLKDDLVKAQKSLDHATPGDIRRG 504
Query: 400 LNCVSRITMEHGITGVVGPILELIDCDEKLFTAVEVTAGNSLFHVVVENDDISTKIIQVL 459
LN VSRI +HGITGV GP+LEL+DC+EK FTAVEVTAGNSLFHVVVENDDIST+IIQVL
Sbjct: 505 LNSVSRIIRDHGITGVFGPVLELVDCEEKFFTAVEVTAGNSLFHVVVENDDISTRIIQVL 564
Query: 460 TREKGGRVTFIPLNRVKVPDVSYPRSDDFVPLLERLECNKANHRRAFEQVFGRTVICKDL 519
TREKGGRVTFIPLNRVKVPDVS P+S DFVPLL++L+ +A+HRRAFEQVFGRTVIC+DL
Sbjct: 565 TREKGGRVTFIPLNRVKVPDVSCPQSPDFVPLLKKLKY-RADHRRAFEQVFGRTVICRDL 623
Query: 520 ETATKVARDNGLNCITLDGDQVARKGHMTGGFHDYRCSKLKFVKTIKNNMKAIEEKEEHL 579
ETATKVAR NGL+CITLDGDQVARKG MTGGF+D R SKLKFVK I++N AIE+K HL
Sbjct: 624 ETATKVARGNGLDCITLDGDQVARKGGMTGGFYDSRRSKLKFVKIIRDNKTAIEKKAAHL 683
Query: 580 KNVERNLSDILSPCLHDADKKMTDLVTKQQQMDAESDHAKSELEHFKVGIASTMKQIGSL 639
+NV L DI+ DKK+TDLVTKQQQMDAE DHAKSELE FKV IAS MKQ+ SL
Sbjct: 684 ENVGSKLRDII-------DKKITDLVTKQQQMDAERDHAKSELEQFKVDIASAMKQMVSL 736
Query: 640 EKALGKK-----------------IETRKEELKANLSTNLMRRQKEFEAVISSADS---- 678
+KALGKK I + +E+ L L +++ + ++ +
Sbjct: 737 DKALGKKEKSLDNIRNQIEQIQSGIAMKNDEMGTELIDQLTSEERDLLSRLNPEITELKE 796
Query: 679 -----KTLSLEAESKEQELNSSKSS----------------------------------- 698
K +E E++++EL ++ S+
Sbjct: 797 KFLLCKNSRIEIETRKEELETNLSTNLMRRQKELEAIISSADSKTLPLEAESKEQELKSS 856
Query: 699 ---LDDLTAMLKANVDAINNFTIKIEELKRQRDNLKTLEANLDQTVRDGAKDLEQLMSSR 755
LD+LTAMLKANVDAINNFT K+EELKRQRD+LK LEANL+QTV+DGAKDLEQLMSSR
Sbjct: 857 KRSLDELTAMLKANVDAINNFTRKMEELKRQRDDLKALEANLEQTVQDGAKDLEQLMSSR 916
Query: 756 SMHLAKQEEC 765
SMHLAKQEEC
Sbjct: 917 SMHLAKQEEC 926
Score = 433 bits (1113), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/277 (77%), Positives = 224/277 (80%), Gaps = 10/277 (3%)
Query: 1009 LTPLPTDAFETYRQKNKRQLQKMLYDCNEQLQQFRHVKKKPLD-CVNFTXXXXXXXXXXX 1067
L LP DAFETY++KNK+QLQKMLYDCNEQLQQF HV KK LD VNFT
Sbjct: 933 LGSLPADAFETYKRKNKKQLQKMLYDCNEQLQQFSHVNKKALDQYVNFTEQREQLQRRRA 992
Query: 1068 XXDAGDQKIRELVSILDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXX 1127
DAGDQKIREL+S+LDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMM
Sbjct: 993 ELDAGDQKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMRKKDGDA 1052
Query: 1128 XXXXXXXXXXXPREPDSEDRMEKYIGVKFLREVLEFQVSFTGQGETQSMKQLSGGQKTVV 1187
PREPD E R+EKYIGVK +VSFTG+GETQSMKQLSGGQKTVV
Sbjct: 1053 DDDDNDEDG--PREPDPEGRIEKYIGVKV-------KVSFTGKGETQSMKQLSGGQKTVV 1103
Query: 1188 ALTLIFAIQRCDPAPFYLFDEIDAALDTQYRTAVGNMIRRLSDMADTQFIATTFRPEIVK 1247
ALTLIFAIQRCDPAPFYLFDEIDAALD QYRTAVGNMIRRL+DMADTQFIATTFRPEI K
Sbjct: 1104 ALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMADTQFIATTFRPEIAK 1163
Query: 1248 VADKIYGVTYKNRVSYINVVSKEQALDFIGHDQTQNA 1284
VADKIYGVT+KNRVSYINVVSKEQALDFI HDQT NA
Sbjct: 1164 VADKIYGVTHKNRVSYINVVSKEQALDFIEHDQTHNA 1200
>Os01g0904400 Similar to Chromosome assembly protein homolog
Length = 1175
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 52/322 (16%)
Query: 412 ITGVVGPILELIDCDEKLFTAVEVTAGNSLFHVVVENDDISTKIIQV--LTREKGGRVTF 469
+ GVV ++++ D TA+EV AG L++VVV+ + +++Q L R RVT
Sbjct: 520 VKGVVARLIKIKDSSTA--TALEVAAGGRLYNVVVDTETTGKQLLQNGDLKR----RVTI 573
Query: 470 IPLNRVK---VPDVSYPRSDDFV-----PLLERLECNKANHRRAFEQVFGRTVICKDLET 521
IPLN+++ +P+ + V L L + A VFG T +C+++E+
Sbjct: 574 IPLNKIQTGTIPERVRQAARRLVGAENVTLALELVGYVEEVKNAMTYVFGSTFVCRNMES 633
Query: 522 ATKVA--RDNGLNCITLDGDQVARKGHMTGGFHDYRCSKLKFVKTIKNNMKAIEEKEEHL 579
A +VA R+ G +TL+GD G +TGG L+ + + + E L
Sbjct: 634 AKEVAFNREVGSTSVTLEGDIFQPSGLLTGGSRRGGGDLLR-------QLHELAKAEADL 686
Query: 580 KNVERNLSDILSP--CLHDADKKMTDLVTKQQQMDAESDHAKSELEHFKVGIAST-MKQI 636
N E+ LS I L KK T+L + Q + +S +L F+ + ++
Sbjct: 687 ANHEKRLSVIEQKIVVLLPLQKKFTEL---KSQFELKS----YDLSLFQNRVEQNEHHKL 739
Query: 637 GSLEKALGKKIETRKEELKANLSTNLMRRQKEFEAVISSADS-----KTLSLEAESK--- 688
G L K L ++++ K+ELKA +Q ++E +S+ KT E E +
Sbjct: 740 GELVKKLEQELQESKQELKA--------KQAQYEKSVSTVSELEKTIKTYGSEREGRLKA 791
Query: 689 -EQELNSSKSSLDDLTAMLKAN 709
E+++ S KS L ++ LKA+
Sbjct: 792 LERKIKSLKSELQSMSKQLKAH 813
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 1075 KIRELVSILDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMXXXXXXXXXXXXXX 1134
KI+ ++ LD++K E+++ T+ V + F +FS L+ G L
Sbjct: 1012 KIKTVIEELDEKKKETLKVTWLKVNKDFGSIFSTLLPGTMAKL----------------- 1054
Query: 1135 XXXXPREPDSEDRMEKYIGVKFLREVLEFQVSFTGQGETQSMKQLSGGQKTVVALTLIFA 1194
P E G FL + LE +V+F G QS+ +LSGGQ++++AL+LI A
Sbjct: 1055 ---DPPE-----------GGTFL-DGLEVRVAF-GTVWKQSLSELSGGQRSLLALSLILA 1098
Query: 1195 IQRCDPAPFYLFDEIDAALDTQYRTAVGNMIRRLSDMADTQFIATTFRPEIVKVADKIYG 1254
+ PAP Y+ DE+DAALD + +G MI+ + +QFI + + + A+ I+
Sbjct: 1099 LLLFKPAPLYILDEVDAALDLSHTQNIGRMIK--AHFPHSQFIVVSLKEGMFNNANVIFR 1156
Query: 1255 VTYKNRVSYI 1264
+ + VS +
Sbjct: 1157 TKFVDGVSTV 1166
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 37,234,832
Number of extensions: 1480240
Number of successful extensions: 4891
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4864
Number of HSP's successfully gapped: 5
Length of query: 1285
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1172
Effective length of database: 11,135,619
Effective search space: 13050945468
Effective search space used: 13050945468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 162 (67.0 bits)