Os02g0133400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SMC protein, N-terminal domain containing protein.
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Os02g0133400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SMC protein, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263.34 | 0.762 | 3 | 0.667 | 0.19 | -0.437 | 0.0204 | -0.0948 | 0.351 | 15.8 | 24.81 | 28 | -- | -- |
| 263.37 | 0.756 | 2.99 | 0.694 | 0.19 | -0.44 | -0.0504 | -- | 0.361 | 15.6 | 24.83 | 27 | -- | -- |
| 263.34 | 0.756 | 3 | 0.669 | 0.19 | -0.437 | -- | -0.0872 | 0.352 | 15.7 | 24.83 | 27 | -- | -- |
| 263.37 | 0.756 | 2.99 | 0.694 | 0.19 | -0.44 | -- | -- | 0.361 | 15.7 | 24.83 | 27 | -- | -- |
| 264.8 | 0.758 | 3 | 0.657 | -- | -0.363 | -- | -0.0612 | 0.313 | -- | 24.85 | 26 | -- | -- |
| 275.27 | 0.778 | 3.05 | 0.591 | 0.112 | -- | 0.305 | -- | 0.129 | 0.749 | -- | -- | -- | -- |
| 275.64 | 0.777 | 3.05 | 0.579 | 0.113 | -- | -- | -- | 0.127 | 1.37 | -- | -- | -- | -- |
| 264.83 | 0.758 | 3 | 0.667 | -- | -0.361 | -- | -- | 0.314 | -- | 24.84 | 26 | -- | -- |
| 275.72 | 0.773 | 3.02 | -- | 0.128 | -0.369 | -- | -- | 0.249 | 15.6 | 24.9 | 27 | -- | -- |
| 276.44 | 0.777 | 3.04 | 0.583 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 284.48 | 0.789 | 3.06 | -- | 0.124 | -- | -- | -- | 0.0623 | 1.54 | -- | -- | -- | -- |
| 276.38 | 0.774 | 3.02 | -- | -- | -0.316 | -- | -- | 0.218 | -- | 24.82 | 26 | -- | -- |
| 285.41 | 0.789 | 3.06 | -- | -- | -- | -- | -- | 0.0645 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 260.08 | temperature | 25 | 30 | > th | dose independent | rect. | 22 | 21 |
| 7 | 261.99 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 9 | 262.52 | wind | 3 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 12 | 262.69 | temperature | 25 | 30 | > th | dose independent | rect. | 11 | 23 |
| 15 | 262.94 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 5 |
| 18 | 263.07 | temperature | 25 | 30 | < th | dose independent | rect. | 12 | 23 |
| 23 | 263.08 | humidity | 60 | 14400 | < th | dose dependent | rect. | 19 | 22 |
| 36 | 263.10 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 22 |
| 40 | 263.11 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 57 | 263.13 | humidity | 60 | 14400 | < th | dose dependent | sin | 22 | NA |
| 111 | 263.18 | humidity | 60 | 14400 | < th | dose dependent | no | NA | NA |
| 278 | 263.67 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 279 | 263.67 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 280 | 263.68 | wind | 3 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 284 | 263.70 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 23 |
| 300 | 263.72 | humidity | 50 | 14400 | < th | dose dependent | sin | 13 | NA |
| 305 | 263.77 | humidity | 50 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 306 | 263.82 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 307 | 263.82 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 308 | 263.82 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 14 |
| 311 | 263.83 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 12 |
| 315 | 263.83 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 19 |
| 325 | 263.86 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 330 | 263.91 | temperature | 25 | 30 | > th | dose independent | rect. | 13 | 23 |
| 331 | 263.93 | temperature | 25 | 30 | > th | dose independent | rect. | 18 | 23 |
| 334 | 263.95 | humidity | 50 | 14400 | > th | dose independent | sin | 16 | NA |
| 339 | 264.00 | humidity | 50 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 356 | 264.00 | temperature | 25 | 30 | < th | dose independent | rect. | 7 | 23 |
| 357 | 264.01 | humidity | 50 | 14400 | < th | dose independent | sin | 16 | NA |
| 378 | 264.02 | temperature | 25 | 30 | > th | dose independent | no | NA | NA |
| 379 | 264.02 | temperature | 25 | 30 | > th | dose independent | rect. | 3 | 23 |
| 380 | 264.03 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 402 | 264.06 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 23 |
| 406 | 264.09 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 23 |
| 407 | 264.09 | temperature | 25 | 30 | < th | dose independent | rect. | 9 | 23 |
| 411 | 264.11 | temperature | 25 | 30 | < th | dose independent | rect. | 19 | 23 |
| 413 | 264.12 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 415 | 264.13 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 419 | 264.14 | temperature | 25 | 30 | < th | dose independent | no | NA | NA |
| 438 | 264.15 | temperature | 25 | 30 | < th | dose independent | rect. | 23 | 23 |
| 443 | 264.16 | temperature | 25 | 30 | < th | dose independent | rect. | 15 | 23 |
| 449 | 264.18 | temperature | 25 | 30 | < th | dose independent | rect. | 17 | 23 |
| 452 | 264.19 | temperature | 25 | 30 | < th | dose independent | rect. | 21 | 23 |
| 510 | 264.31 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 518 | 264.34 | temperature | 25 | 30 | < th | dose independent | rect. | 4 | 23 |
| 538 | 264.37 | temperature | 25 | 30 | > th | dose independent | rect. | 24 | 23 |
| 578 | 264.42 | humidity | 80 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 591 | 264.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 13 |
| 603 | 264.45 | wind | 3 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 639 | 264.48 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 660 | 264.51 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 665 | 264.53 | humidity | 50 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 667 | 264.53 | humidity | 50 | 14400 | > th | dose independent | rect. | 7 | 19 |
| 672 | 264.53 | humidity | 50 | 14400 | > th | dose independent | rect. | 23 | 21 |
| 699 | 264.54 | humidity | 50 | 14400 | > th | dose independent | rect. | 1 | 19 |
| 726 | 264.55 | humidity | 50 | 14400 | > th | dose independent | no | NA | NA |
| 793 | 264.58 | humidity | 50 | 14400 | < th | dose independent | no | NA | NA |
| 915 | 264.58 | humidity | 60 | 14400 | < th | dose dependent | sin | 10 | NA |
| 916 | 264.59 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 918 | 264.59 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 939 | 264.68 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 1 |