BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0131300 Os02g0131300|AK066913
         (240 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0131300  Conserved hypothetical protein                      409   e-114
AK110888                                                          133   1e-31

>Os02g0131300 Conserved hypothetical protein
          Length = 240

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/240 (87%), Positives = 210/240 (87%)

Query: 1   MALAARLVSRSRQLYSAQAALANGGATQVRLYAKEADRTPVNGDDLLKGIFFEVKKKFET 60
           MALAARLVSRSRQLYSAQAALANGGATQVRLYAKEADRTPVNGDDLLKGIFFEVKKKFET
Sbjct: 1   MALAARLVSRSRQLYSAQAALANGGATQVRLYAKEADRTPVNGDDLLKGIFFEVKKKFET 60

Query: 61  ALGVLKKEKITIDPDDPAAVSRYAQVMKTVRQKADLLSDSERIKYTIDTFTKGIPDARTY 120
           ALGVLKKEKITIDPDDPAAVSRYAQVMKTVRQKADLLSDSERIKYTIDTFTKGIPDARTY
Sbjct: 61  ALGVLKKEKITIDPDDPAAVSRYAQVMKTVRQKADLLSDSERIKYTIDTFTKGIPDARTY 120

Query: 121 LNTLQEIRIKSGLIDDMGXXXXXXXXXXKVEKEIKKPLLRSDKKNMGLLLAEFEKINKKL 180
           LNTLQEIRIKSGLIDDMG          KVEKEIKKPLLRSDKKNMGLLLAEFEKINKKL
Sbjct: 121 LNTLQEIRIKSGLIDDMGAEAMMMEALEKVEKEIKKPLLRSDKKNMGLLLAEFEKINKKL 180

Query: 181 GIRXXXXXXXXXXXXXXXXXXXXTELKKECVEAMEVQLKREEFKDEEMPDVKKLDIRNFL 240
           GIR                    TELKKECVEAMEVQLKREEFKDEEMPDVKKLDIRNFL
Sbjct: 181 GIRKEDLPKIEEELELEIAKSELTELKKECVEAMEVQLKREEFKDEEMPDVKKLDIRNFL 240



>AK110888 
          Length = 87

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/66 (98%), Positives = 65/66 (98%)

Query: 1  MALAARLVSRSRQLYSAQAALANGGATQVRLYAKEADRTPVNGDDLLKGIFFEVKKKFET 60
          MALAARLVSRSRQLYSAQAALANGGATQVRLYAKEADRTPVNGDDLLKGIFFEVKKKFET
Sbjct: 1  MALAARLVSRSRQLYSAQAALANGGATQVRLYAKEADRTPVNGDDLLKGIFFEVKKKFET 60

Query: 61 ALGVLK 66
          ALGVL 
Sbjct: 61 ALGVLN 66



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,026,077
Number of extensions: 200058
Number of successful extensions: 513
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 2
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)