BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0129900 Os02g0129900|Os02g0129900
         (300 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0129900  PGAP1-like family protein                           467   e-132

>Os02g0129900 PGAP1-like family protein
          Length = 300

 Score =  467 bits (1201), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/276 (84%), Positives = 233/276 (84%)

Query: 25  QGLGNNTXXXXXXXXXXXXXHGXXXXXXXXXXXXDWLRNAAGLVDPSYWRCNLRPRPVLD 84
           QGLGNNT             HG            DWLRNAAGLVDPSYWRCNLRPRPVLD
Sbjct: 25  QGLGNNTADYARLAAALRDDHGVPAVAVARVSRPDWLRNAAGLVDPSYWRCNLRPRPVLD 84

Query: 85  WYLKRVDEAVSEARELSPNEGISLIGHSAGGWLARVYMEEFDASDISXXXXXXXXXXXXX 144
           WYLKRVDEAVSEARELSPNEGISLIGHSAGGWLARVYMEEFDASDIS             
Sbjct: 85  WYLKRVDEAVSEARELSPNEGISLIGHSAGGWLARVYMEEFDASDISLLLTLGTPHLPPP 144

Query: 145 XXXXXVIDQTRGLLTYVEKNCAPAVYTPELKYVCIAGRYIQGAPLTGNTIATTDDILAVD 204
                VIDQTRGLLTYVEKNCAPAVYTPELKYVCIAGRYIQGAPLTGNTIATTDDILAVD
Sbjct: 145 KGTPGVIDQTRGLLTYVEKNCAPAVYTPELKYVCIAGRYIQGAPLTGNTIATTDDILAVD 204

Query: 205 TPSDIAEAVMVSTNDKSTQSGPTLRARFIGQGYKQVCGRADVWGDGVVPEVSAHLEGALN 264
           TPSDIAEAVMVSTNDKSTQSGPTLRARFIGQGYKQVCGRADVWGDGVVPEVSAHLEGALN
Sbjct: 205 TPSDIAEAVMVSTNDKSTQSGPTLRARFIGQGYKQVCGRADVWGDGVVPEVSAHLEGALN 264

Query: 265 ISFDGVYHSPVGSDDEQRPWYGSPAILKQWVHHLLS 300
           ISFDGVYHSPVGSDDEQRPWYGSPAILKQWVHHLLS
Sbjct: 265 ISFDGVYHSPVGSDDEQRPWYGSPAILKQWVHHLLS 300



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,851,183
Number of extensions: 356048
Number of successful extensions: 733
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)