BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0128300 Os02g0128300|AK101453
         (446 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0128300  ENTH/VHS domain containing protein                  679   0.0  

>Os02g0128300 ENTH/VHS domain containing protein
          Length = 446

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/435 (83%), Positives = 365/435 (83%)

Query: 12  KFLAELFRAQDEAVASRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIT 71
           KFLAELFRAQDEAVASRN                                        IT
Sbjct: 12  KFLAELFRAQDEAVASRNPNPTPPPPPPPPDLISYLPPPSTSSYPSSSAAAAALPLSYIT 71

Query: 72  PGPHVFSAAPVHFLPPRELSQHPQGFDVGLRDFSPPRELSQRPAAEVSSREIVAVSSXXX 131
           PGPHVFSAAPVHFLPPRELSQHPQGFDVGLRDFSPPRELSQRPAAEVSSREIVAVSS   
Sbjct: 72  PGPHVFSAAPVHFLPPRELSQHPQGFDVGLRDFSPPRELSQRPAAEVSSREIVAVSSGIA 131

Query: 132 XXXXXXXXXXXXXXXXXXXXXXXXXXXVERLKRELNRVSKQMNDVKNECSELKKDRTRKD 191
                                      VERLKRELNRVSKQMNDVKNECSELKKDRTRKD
Sbjct: 132 GADRFRGGGGGGARRERDAREAADRREVERLKRELNRVSKQMNDVKNECSELKKDRTRKD 191

Query: 192 LEIKAKEAEIQSLRRANVGSANKYAGSMAMDIDQSVHAPANGALHTGDSCLASTRRAETL 251
           LEIKAKEAEIQSLRRANVGSANKYAGSMAMDIDQSVHAPANGALHTGDSCLASTRRAETL
Sbjct: 192 LEIKAKEAEIQSLRRANVGSANKYAGSMAMDIDQSVHAPANGALHTGDSCLASTRRAETL 251

Query: 252 NGRNKELSSPQDGLCLNQRNQTYASEVLEESVRFESKGSKHKEIKTVGVQTDLPGNNEYL 311
           NGRNKELSSPQDGLCLNQRNQTYASEVLEESVRFESKGSKHKEIKTVGVQTDLPGNNEYL
Sbjct: 252 NGRNKELSSPQDGLCLNQRNQTYASEVLEESVRFESKGSKHKEIKTVGVQTDLPGNNEYL 311

Query: 312 EHKKVLVDRISSNLCAVWGMPTNSLMGRSLISKILVSCSEEILTLVQSTGSLDKCEASSE 371
           EHKKVLVDRISSNLCAVWGMPTNSLMGRSLISKILVSCSEEILTLVQSTGSLDKCEASSE
Sbjct: 312 EHKKVLVDRISSNLCAVWGMPTNSLMGRSLISKILVSCSEEILTLVQSTGSLDKCEASSE 371

Query: 372 ASSSVRNAISQVYDIIIKTSSDTIPIQTLLEALLNLAAVGNDAVVSRALRMLHSVLQHLL 431
           ASSSVRNAISQVYDIIIKTSSDTIPIQTLLEALLNLAAVGNDAVVSRALRMLHSVLQHLL
Sbjct: 372 ASSSVRNAISQVYDIIIKTSSDTIPIQTLLEALLNLAAVGNDAVVSRALRMLHSVLQHLL 431

Query: 432 NNRTMSNQRYALLLH 446
           NNRTMSNQRYALLLH
Sbjct: 432 NNRTMSNQRYALLLH 446



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.128    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,709,648
Number of extensions: 410532
Number of successful extensions: 1036
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1034
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)