BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0123300 Os02g0123300|011-007-G12
(397 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0123300 Similar to Eukaryotic translation initiation f... 685 0.0
Os07g0124500 Similar to Eukaryotic translation initiation f... 649 0.0
AK110504 327 8e-90
AK109950 320 9e-88
>Os02g0123300 Similar to Eukaryotic translation initiation factor 3 subunit 8
(eIF3 p110) (eIF3c) (p105)
Length = 397
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/397 (85%), Positives = 338/397 (85%)
Query: 1 SVARDLLLMSHLQDGVQLMDISSQILFNRVMAQLGLCAFRAGLIIEAHGCLSELYSTGRV 60
SVARDLLLMSHLQDGVQLMDISSQILFNRVMAQLGLCAFRAGLIIEAHGCLSELYSTGRV
Sbjct: 1 SVARDLLLMSHLQDGVQLMDISSQILFNRVMAQLGLCAFRAGLIIEAHGCLSELYSTGRV 60
Query: 61 KELLAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHLICAMLIEVPNMAAST 120
KELLAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHLICAMLIEVPNMAAST
Sbjct: 61 KELLAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHLICAMLIEVPNMAAST 120
Query: 121 YDKRKFMNRTFRRLLEISERQTFVGPPENVRDHVMAATRALSKGDHQKAFDVINSLEIWK 180
YDKRKFMNRTFRRLLEISERQTFVGPPENVRDHVMAATRALSKGDHQKAFDVINSLEIWK
Sbjct: 121 YDKRKFMNRTFRRLLEISERQTFVGPPENVRDHVMAATRALSKGDHQKAFDVINSLEIWK 180
Query: 181 LLRNKEHVLEMLKLKIKEEALRTYLFSYSSCYQSLSLDQLTTMFDLSEQQAHSIVSKMMM 240
LLRNKEHVLEMLKLKIKEEALRTYLFSYSSCYQSLSLDQLTTMFDLSEQQAHSIVSKMMM
Sbjct: 181 LLRNKEHVLEMLKLKIKEEALRTYLFSYSSCYQSLSLDQLTTMFDLSEQQAHSIVSKMMM 240
Query: 241 HEELHASWDQPTKCIIFHNVDQTRLQGLLFQMADKLSVLVESNERAYEAKTGGTFEGAPP 300
HEELHASWDQPTKCIIFHNVDQTRLQGLLFQMADKLSVLVESNERAYEAKTGGTFEGAPP
Sbjct: 241 HEELHASWDQPTKCIIFHNVDQTRLQGLLFQMADKLSVLVESNERAYEAKTGGTFEGAPP 300
Query: 301 RRRGDAQDSSNLGKWQENFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
RRRGDAQDSSNLGKWQENFV
Sbjct: 301 RRRGDAQDSSNLGKWQENFVSSQGRQGGGRSGYSGRGGGSGRGGGGYQRDRGSQGSRGGY 360
Query: 361 XXXXXXXXXXXXXTGSMAKXXXXXXARMVSLNRAGRG 397
TGSMAK ARMVSLNRAGRG
Sbjct: 361 GGGSRFQDGGRSRTGSMAKGGGDGGARMVSLNRAGRG 397
>Os07g0124500 Similar to Eukaryotic translation initiation factor 3 subunit 8
(eIF3 p110) (eIF3c)
Length = 936
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/321 (96%), Positives = 315/321 (98%), Gaps = 1/321 (0%)
Query: 1 SVARDLLLMSHLQDGVQLMDISSQILFNRVMAQLGLCAFRAGLIIEAHGCLSELYSTGRV 60
SVARDLLLMSHLQDGVQLMDISSQILFNRVMAQLGLCAFRAGLIIEAHGCLSELYSTGRV
Sbjct: 538 SVARDLLLMSHLQDGVQLMDISSQILFNRVMAQLGLCAFRAGLIIEAHGCLSELYSTGRV 597
Query: 61 KELLAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHLICAMLIEVPNMAAST 120
KELLAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHLICAMLIEVPNMAAST
Sbjct: 598 KELLAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHLICAMLIEVPNMAAST 657
Query: 121 YDKRKFMNRTFRRLLEISERQTFVGPPENVRDHVMAATRALSKGDHQKAFDVINSLEIWK 180
YD+RK MNRTFRRLLEISERQTFVGPPENVRDHVMAATRAL KGD+QKAFDVINSLEIWK
Sbjct: 658 YDRRKSMNRTFRRLLEISERQTFVGPPENVRDHVMAATRALRKGDYQKAFDVINSLEIWK 717
Query: 181 LLRNKEHVLEMLKLKIKEEALRTYLFSYSSCYQSLSLDQLTTMFDLSEQQAHSIVSKMMM 240
LLRNKEHVLEMLKLKIKEEALRTYL SYSSCY+SLSLDQLTTMFDLSEQQAHSIVSKMMM
Sbjct: 718 LLRNKEHVLEMLKLKIKEEALRTYLLSYSSCYESLSLDQLTTMFDLSEQQAHSIVSKMMM 777
Query: 241 HEELHASWDQPTKCIIFHNVDQTRLQGLLFQMADKLSVLVESNERAYEAKTGGTFEGAPP 300
HEELHASWDQPTKCIIFHNVDQTRLQGLLFQM+DKLSVLVESNERAYEAKTGGT EGAPP
Sbjct: 778 HEELHASWDQPTKCIIFHNVDQTRLQGLLFQMSDKLSVLVESNERAYEAKTGGTLEGAPP 837
Query: 301 RRR-GDAQDSSNLGKWQENFV 320
RRR GD QDSSNLGKWQENFV
Sbjct: 838 RRRGGDGQDSSNLGKWQENFV 858
>AK110504
Length = 408
Score = 327 bits (839), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 158/296 (53%), Positives = 220/296 (74%), Gaps = 4/296 (1%)
Query: 3 ARDLLLMSHLQDGVQLMDISSQILFNRVMAQLGLCAFRAGLIIEAHGCLSELYSTGRVKE 62
ARD++LMSHLQ+ + D+++QILFNR + Q+GLCAFRAGL+ E+ L E+ + R KE
Sbjct: 66 ARDMMLMSHLQETISNFDVNTQILFNRALVQVGLCAFRAGLVYESQTSLQEICGSNRQKE 125
Query: 63 LLAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHLICAMLIEVPNMA--AST 120
LLAQG+Q RY + +PEQERLER+RQ+P+HMHINLELLE +L C+ML+E+P +A S+
Sbjct: 126 LLAQGLQMQRYSQISPEQERLERQRQLPFHMHINLELLECVYLTCSMLLEIPLLAQLGSS 185
Query: 121 YDKRK-FMNRTFRRLLEISERQTFVGPPENVRDHVMAATRALSKGDHQKAFDVINSLEIW 179
D RK +++T+RRLLE ERQ F GPPEN RDHVM A++ALS G+ +KA + INS++IW
Sbjct: 186 PDLRKRVISKTYRRLLEYHERQIFTGPPENTRDHVMQASKALSAGEWKKAAEFINSIKIW 245
Query: 180 KLLRNKEHVLEMLKLKIKEEALRTYLFSYSSCYQSLSLDQLTTMFDLSEQQAHSIVSKMM 239
+L+ N E + EML +I+EE LRTYLF+Y+ Y +L++ L +MF+LSE++ ++V+KM+
Sbjct: 246 ELMANSEKIKEMLSGQIQEEGLRTYLFTYAPFYDTLAVSTLASMFELSERKVSAVVAKMI 305
Query: 240 MHEELHASWDQPTKCIIFH-NVDQTRLQGLLFQMADKLSVLVESNERAYEAKTGGT 294
HEEL A+ DQ IIF V+ +RLQ L ++DK S L+ESNE+ E +T GT
Sbjct: 306 SHEELAAALDQVNSAIIFRKGVELSRLQTLALSLSDKASGLIESNEKTLEQRTQGT 361
>AK109950
Length = 895
Score = 320 bits (821), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 156/307 (50%), Positives = 219/307 (71%), Gaps = 7/307 (2%)
Query: 2 VARDLLLMSHLQDGVQLMDISSQILFNRVMAQLGLCAFRAGLIIEAHGCLSELYSTGRVK 61
VARD+ LMSHLQD +QL D+++QIL+NRV+ Q+G+CAFR GLI E+ L E+++TGRVK
Sbjct: 550 VARDMFLMSHLQDAIQLADVATQILYNRVVVQIGICAFRNGLIKESQVALQEIFATGRVK 609
Query: 62 ELLAQGVQ-QSRYHEKTPEQERLERRRQMPYHMHINLELLEATHLICAMLIEVPNMAAST 120
ELLAQG+Q Q+++ TPEQE+LER+RQ+P+HMHINLELLE +LI +ML+EVPNMA +
Sbjct: 610 ELLAQGLQKQNQFSTITPEQEKLERQRQLPFHMHINLELLECIYLISSMLLEVPNMALAG 669
Query: 121 YD---KRKFMNRTFRRLLEISERQTFVGPPENVRDHVMAATRALSKGDHQKAFDVINSLE 177
D +++ ++R FRR+L+ ++RQ F GPPEN RDH+M A +AL GD ++I ++
Sbjct: 670 NDPELRKRVISRPFRRMLDYTDRQVFSGPPENTRDHIMQACKALQNGDCNACIELIADIK 729
Query: 178 IWKLLRNKEHVLEMLKLKIKEEALRTYLFSYSSCYQSLSLDQLTTMFDLSEQQAHSIVSK 237
IWKLL E V ML +I+E LRTYLFSYS+ Y+S+SL L FD+ ++Q ++VSK
Sbjct: 730 IWKLLPGSEAVKTMLAQRIQEVGLRTYLFSYSAYYESVSLAHLAATFDVQQKQVKAMVSK 789
Query: 238 MMMHEELHASWDQPTKCIIFHNVDQTRLQGLLFQMADKLSVLVESNERAYEAKTGGTFEG 297
M+ ++EL AS D + FH ++ T++Q L +ADK + ++E NER +AK G EG
Sbjct: 790 MIYNDELAASLDPKANVVSFHRLELTKVQQLAATLADKANSMLEQNERLLDAKLG---EG 846
Query: 298 APPRRRG 304
R G
Sbjct: 847 KEQRSSG 853
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,607,553
Number of extensions: 378195
Number of successful extensions: 986
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 981
Number of HSP's successfully gapped: 4
Length of query: 397
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 294
Effective length of database: 11,657,759
Effective search space: 3427381146
Effective search space used: 3427381146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)