BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0119400 Os02g0119400|AK102774
         (232 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0119400  Similar to Syntaxin 52 (AtSYP52)                    471   e-133
Os08g0277900  Similar to Syntaxin 52 (AtSYP52)                    430   e-121
Os03g0121450                                                      205   2e-53

>Os02g0119400 Similar to Syntaxin 52 (AtSYP52)
          Length = 232

 Score =  471 bits (1212), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 1   MASSSDPWVREYSEASRLADDVTSMIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSL 60
           MASSSDPWVREYSEASRLADDVTSMIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSL
Sbjct: 1   MASSSDPWVREYSEASRLADDVTSMIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSL 60

Query: 61  EALLSRIPPKSITDKELHKRQDMLSNLKSRAKQMATSFNMSNFANREDLLGQSKKAADDM 120
           EALLSRIPPKSITDKELHKRQDMLSNLKSRAKQMATSFNMSNFANREDLLGQSKKAADDM
Sbjct: 61  EALLSRIPPKSITDKELHKRQDMLSNLKSRAKQMATSFNMSNFANREDLLGQSKKAADDM 120

Query: 121 SRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDDY 180
           SRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDDY
Sbjct: 121 SRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDDY 180

Query: 181 VDVTNSRLQRVQKRLAILNKRVKGGCSCMALLISVVAIVFLAVIAWLLIKHL 232
           VDVTNSRLQRVQKRLAILNKRVKGGCSCMALLISVVAIVFLAVIAWLLIKHL
Sbjct: 181 VDVTNSRLQRVQKRLAILNKRVKGGCSCMALLISVVAIVFLAVIAWLLIKHL 232



>Os08g0277900 Similar to Syntaxin 52 (AtSYP52)
          Length = 232

 Score =  430 bits (1106), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/232 (89%), Positives = 223/232 (96%)

Query: 1   MASSSDPWVREYSEASRLADDVTSMIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSL 60
           MASSSDPW++EY+EASRLADD+ SMIADRGSLPQSGPEI+RHTSAIRRKITIL TRLDSL
Sbjct: 1   MASSSDPWMKEYNEASRLADDINSMIADRGSLPQSGPEIIRHTSAIRRKITILCTRLDSL 60

Query: 61  EALLSRIPPKSITDKELHKRQDMLSNLKSRAKQMATSFNMSNFANREDLLGQSKKAADDM 120
           EALLS+IPPKS++DKELHKRQD LSNLKS+ KQMATSFNMSNFANREDLLGQ+KKAADDM
Sbjct: 61  EALLSKIPPKSLSDKELHKRQDTLSNLKSKTKQMATSFNMSNFANREDLLGQNKKAADDM 120

Query: 121 SRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDDY 180
           SRVAGLDNQGIV LQRQ+MKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDL+D+
Sbjct: 121 SRVAGLDNQGIVGLQRQIMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLEDH 180

Query: 181 VDVTNSRLQRVQKRLAILNKRVKGGCSCMALLISVVAIVFLAVIAWLLIKHL 232
           VDVTNSRLQRVQKRLAILNKR KGGCSCM LL+SVVAIV LAVI WLLIK++
Sbjct: 181 VDVTNSRLQRVQKRLAILNKRTKGGCSCMCLLLSVVAIVILAVIVWLLIKYM 232



>Os03g0121450 
          Length = 324

 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 159/237 (67%), Gaps = 6/237 (2%)

Query: 1   MASSSDP---WVREYSEASRLADDVTSMIADRGSLPQSGP-EIMRHTSAIRRKITILGTR 56
           +A++S P   W++ + EA RL  DV   IA+R S+  S P E+ R T+ IRRK+ IL TR
Sbjct: 88  VATASSPLEQWMKRFEEAERLVADVVERIAERESVSPSLPQELQRRTAEIRRKVAILETR 147

Query: 57  LDSLEALLSRIPPKS-ITDKELHKRQDMLSNLKSRAKQMATSFNMSNFANREDLLGQSKK 115
           LD ++  LS++P K  I+ KEL+K     S L S+ K++   F    F+NR DLLG    
Sbjct: 148 LDMMQEDLSQLPNKQRISLKELNKLAAKHSTLSSKVKEVGAPFTRKRFSNRSDLLGPDDN 207

Query: 116 AAD-DMSRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLI 174
            A  D+S +A +DN+ I+ LQR V+KEQD+ L+KLEET++STKHIALA+NEEL LHTRLI
Sbjct: 208 HAKIDVSSIANMDNREIIELQRNVIKEQDDELDKLEETIVSTKHIALAINEELDLHTRLI 267

Query: 175 DDLDDYVDVTNSRLQRVQKRLAILNKRVKGGCSCMALLISVVAIVFLAVIAWLLIKH 231
           DDLD+  + T+++LQR QK+L  +  R++   SC  LL+SV+A+V L  + W LI +
Sbjct: 268 DDLDEKTEETSNQLQRAQKKLKSVTTRMRKSASCSCLLLSVIAVVILVALLWALIMY 324



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,714,420
Number of extensions: 238158
Number of successful extensions: 864
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 861
Number of HSP's successfully gapped: 4
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)