Os08g0277900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Syntaxin 52 (AtSYP52).
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Os08g0277900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Syntaxin 52 (AtSYP52).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.95 | 0.182 | 12.6 | 0.0297 | 0.49 | -0.575 | 0.137 | 0.0949 | 0.249 | 1.67 | 24.75 | 108 | -- | -- |
| 14.81 | 0.179 | 12.6 | 0.0446 | 0.467 | -0.653 | 0.13 | -- | 0.271 | 1.7 | 23.01 | 193 | -- | -- |
| 14.91 | 0.18 | 12.6 | 0.0255 | 0.468 | -0.669 | -- | -0.0141 | 0.255 | 1.7 | 23.1 | 192 | -- | -- |
| 14.89 | 0.18 | 12.6 | 0.0363 | 0.465 | -0.655 | -- | -- | 0.272 | 1.7 | 23.01 | 191 | -- | -- |
| 24.5 | 0.231 | 12.6 | 0.0354 | -- | -0.564 | -- | -0.0461 | 0.244 | -- | 26.16 | 933 | -- | -- |
| 19.8 | 0.209 | 12.6 | 0.186 | 0.394 | -- | 0.17 | -- | 0.36 | 1.57 | -- | -- | -- | -- |
| 19.92 | 0.209 | 12.6 | 0.18 | 0.394 | -- | -- | -- | 0.359 | 1.59 | -- | -- | -- | -- |
| 24.5 | 0.231 | 12.6 | 0.0347 | -- | -0.552 | -- | -- | 0.243 | -- | 26.3 | 937 | -- | -- |
| 14.92 | 0.18 | 12.6 | -- | 0.467 | -0.671 | -- | -- | 0.266 | 1.71 | 23.02 | 192 | -- | -- |
| 29.4 | 0.253 | 12.6 | 0.196 | -- | -- | -- | -- | 0.368 | -- | -- | -- | -- | -- |
| 20.77 | 0.213 | 12.6 | -- | 0.397 | -- | -- | -- | 0.339 | 1.6 | -- | -- | -- | -- |
| 24.52 | 0.231 | 12.6 | -- | -- | -0.567 | -- | -- | 0.238 | -- | 26.3 | 937 | -- | -- |
| 30.42 | 0.257 | 12.6 | -- | -- | -- | -- | -- | 0.346 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.40 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 3 | 14.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 15 |
| 7 | 14.53 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 10 | 14.54 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 37 | 14.68 | temperature | 15 | 270 | > th | dose dependent | sin | 10 | NA |
| 103 | 14.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 158 | 14.98 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 163 | 14.99 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 218 | 15.08 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 14 |
| 247 | 15.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 270 | 15.16 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 273 | 15.17 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 22 |
| 291 | 15.20 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 14 |
| 293 | 15.20 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 16 |
| 309 | 15.23 | temperature | 20 | 10 | < th | dose independent | sin | 8 | NA |
| 310 | 15.23 | temperature | 20 | 270 | < th | dose independent | sin | 10 | NA |
| 316 | 15.23 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 332 | 15.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 350 | 15.27 | temperature | 20 | 270 | > th | dose independent | sin | 10 | NA |
| 427 | 15.35 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 18 |
| 479 | 15.38 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 546 | 15.43 | temperature | 20 | 10 | > th | dose independent | sin | 8 | NA |
| 578 | 15.45 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 13 |
| 591 | 15.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 754 | 15.57 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 786 | 15.59 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 841 | 15.62 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 848 | 15.63 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 889 | 15.66 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 946 | 15.70 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 955 | 15.71 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 20 |
| 997 | 15.73 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |