BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0277900 Os08g0277900|AK072643
(232 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G79590.1 | chr1:29947064-29948304 FORWARD LENGTH=234 282 1e-76
AT1G16240.1 | chr1:5555183-5556340 REVERSE LENGTH=233 275 1e-74
AT1G16230.1 | chr1:5553467-5554324 REVERSE LENGTH=194 187 4e-48
AT1G16225.1 | chr1:5551041-5552028 REVERSE LENGTH=200 134 3e-32
AT1G28490.1 | chr1:10016433-10017842 FORWARD LENGTH=246 56 1e-08
>AT1G79590.1 | chr1:29947064-29948304 FORWARD LENGTH=234
Length = 233
Score = 282 bits (721), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 136/210 (64%), Positives = 175/210 (83%), Gaps = 1/210 (0%)
Query: 1 MASSSDPWMKEYNEASRLADDINSMIADRGSLPQSGPEIIRHTSAIRRKITILCTRLDSL 60
MASSSDPWM+EYNEA +L++DIN M+++R + +GP+ R SAIRRKITIL TRLDSL
Sbjct: 1 MASSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSL 60
Query: 61 EALLSKIPPKS-LSDKELHKRQDTLSNLKSKTKQMATSFNMSNFANREDLLGQNKKAADD 119
++LL K+P K +S+KE+++R+D + NL+SKT Q+A++ NMSNFANR+ L G + K D
Sbjct: 61 QSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDA 120
Query: 120 MSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLED 179
++RV+G+DNQGIV QRQ+M+EQDEGLEKLEETV+STKHIALAVNEELTL TRLIDDL+
Sbjct: 121 INRVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDY 180
Query: 180 HVDVTNSRLQRVQKRLAILNKRTKGGCSCM 209
VD+T+SRL+RVQK LA++NK K GCSCM
Sbjct: 181 DVDITDSRLRRVQKSLALMNKSMKSGCSCM 210
>AT1G16240.1 | chr1:5555183-5556340 REVERSE LENGTH=233
Length = 232
Score = 275 bits (704), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 132/209 (63%), Positives = 169/209 (80%)
Query: 1 MASSSDPWMKEYNEASRLADDINSMIADRGSLPQSGPEIIRHTSAIRRKITILCTRLDSL 60
MASSSD WM+ YNEA +L+++IN MI++R S +GP+ R SAIRRKITI +LDSL
Sbjct: 1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSL 60
Query: 61 EALLSKIPPKSLSDKELHKRQDTLSNLKSKTKQMATSFNMSNFANREDLLGQNKKAADDM 120
++LL++I K +S+KE+++R+D + NL+SK QMA + NMSNFANR+ LLG + K D M
Sbjct: 61 QSLLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSM 120
Query: 121 SRVAGLDNQGIVGLQRQIMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLEDH 180
SRV G+DNQGIVG QRQ+M+EQDEGLE+LE TV+STKHIALAV+EEL L TRLIDDL+ H
Sbjct: 121 SRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYH 180
Query: 181 VDVTNSRLQRVQKRLAILNKRTKGGCSCM 209
VDVT+SRL+RVQK LA++NK + GCSCM
Sbjct: 181 VDVTDSRLRRVQKSLAVMNKNMRSGCSCM 209
>AT1G16230.1 | chr1:5553467-5554324 REVERSE LENGTH=194
Length = 193
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/194 (50%), Positives = 137/194 (70%), Gaps = 2/194 (1%)
Query: 1 MASSSDPWMKEYNEASRLADDINSMIADRGSLPQSGPEIIRHTSAIRRKITILCTRLDSL 60
MAS D W++E NE +L+++I+ MI +R SL ++ +RH S++RRKITIL TR+ +L
Sbjct: 1 MASLCDSWIREQNETLKLSEEIDGMILERSSLAETSSYALRHASSMRRKITILATRVQTL 60
Query: 61 EALLSKIPPKSLSDKELHKRQDTLSNLKSKTKQMATSFNMSNFANREDLLGQNKKAADDM 120
+ LL++ KS+S KE+ +R+ T NL+SK QMA++ +M F+N + LL K D M
Sbjct: 61 KYLLAESQGKSISGKEMSRRKGTFENLRSKANQMASALDMLKFSNIDILLRPEKD--DIM 118
Query: 121 SRVAGLDNQGIVGLQRQIMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLEDH 180
SRV GLDNQGIVGL RQ+MKE DE L+ LEETV+ KH AL +NE++ L TRLID L+ H
Sbjct: 119 SRVIGLDNQGIVGLHRQVMKEHDEALDMLEETVMRVKHNALVMNEQIGLQTRLIDGLDHH 178
Query: 181 VDVTNSRLQRVQKR 194
VDV++S ++ + R
Sbjct: 179 VDVSDSGVRVIHIR 192
>AT1G16225.1 | chr1:5551041-5552028 REVERSE LENGTH=200
Length = 199
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 110/169 (65%), Gaps = 4/169 (2%)
Query: 25 MIADRGSLPQSGPEIIRHTSAIRRKITILCTRLDSLEALLSKIPPKSLSDKELHKRQDTL 84
MI +R SL ++ H S +RRKITIL + +L+ LL++ KS+S KE+ + +D +
Sbjct: 1 MILERSSLAETSSYARGHASYMRRKITILANGVQTLKNLLAESQGKSISAKEMSRCKDMV 60
Query: 85 SNLKSKTKQMATSFNMSNFANREDLLGQNKKAADDMSRVAGLDNQGIVGLQRQIMKEQDE 144
+L+SK QMA++ +M F+N LLGQ+ D MSRV +DNQ IVG QR MK QD+
Sbjct: 61 EDLRSKAYQMASALDMLKFSNIGSLLGQD----DIMSRVIDMDNQEIVGFQRTTMKVQDK 116
Query: 145 GLEKLEETVLSTKHIALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQK 193
LE LE+ V+ K ALA+N EL L TRLID L+ HVDV+ S ++ +Q+
Sbjct: 117 ALEMLEKGVMHLKREALAMNMELGLQTRLIDRLDHHVDVSASDVEELQR 165
>AT1G28490.1 | chr1:10016433-10017842 FORWARD LENGTH=246
Length = 245
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 114/233 (48%), Gaps = 27/233 (11%)
Query: 1 MASSSDPWMKEYNEASRLADDINSMIADRGSLPQSGPEIIRHTSAIRRKITILC----TR 56
M+S+ DP+ Y + D I+ + + + P++ + + +++ C +
Sbjct: 1 MSSAQDPF---YIVKEEIQDSIDKLQSTFHKWERISPDM-GDQAHVAKELVATCGSIEWQ 56
Query: 57 LDSLE---ALLSKIPP-KSLSDKELHKRQDTLSNLKSKTK---------QMATSFNMSNF 103
+D LE + +K P + + EL KR+ SN +++ + ++++ ++
Sbjct: 57 VDELEKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSSGAGHASE 116
Query: 104 ANREDLLGQNKKAADDMSRVAGLDNQGIVGLQ--RQIM--KEQDEGLEKLEETVLSTKHI 159
RE + N A + G D+ G V + RQ++ K+QDE L++L ++V +
Sbjct: 117 VRRELMRMPNSGEASRYDQYGGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGV 176
Query: 160 ALAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKRLAILNKR--TKGGCSCMC 210
L +++EL R+ID+L+ +D T +RL+ VQK++ ++ K+ KG +C
Sbjct: 177 GLTIHDELVAQERIIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQMMMIC 229
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,205,384
Number of extensions: 159333
Number of successful extensions: 763
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 5
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)