BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0117600 Os02g0117600|AK112015
         (234 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0117600  Peptidylprolyl isomerase, FKBP-type domain con...   347   3e-96
Os07g0188233  Peptidylprolyl isomerase, FKBP-type domain con...   104   4e-23

>Os02g0117600 Peptidylprolyl isomerase, FKBP-type domain containing protein
          Length = 234

 Score =  347 bits (891), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 177/216 (81%), Positives = 177/216 (81%)

Query: 19  RTFYRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFLIAVSPPSLAARR 78
           RTFYRH                                       GFLIAVSPPSLAARR
Sbjct: 19  RTFYRHSLPSSAPPPPSRGACAAACCCLRAAVSRRRAAAQLLSAAGFLIAVSPPSLAARR 78

Query: 79  GRMVVSLEDYVTSPDGLKYYDLVEGKGPTAEKGSTVQVHFDCIYRGITAVSSREAKLLAG 138
           GRMVVSLEDYVTSPDGLKYYDLVEGKGPTAEKGSTVQVHFDCIYRGITAVSSREAKLLAG
Sbjct: 79  GRMVVSLEDYVTSPDGLKYYDLVEGKGPTAEKGSTVQVHFDCIYRGITAVSSREAKLLAG 138

Query: 139 NRSIAQPYEFSVGSLPGKERKREFVDSANGLYSAQASPKPPAAMYTITEGMKVGGKRRVI 198
           NRSIAQPYEFSVGSLPGKERKREFVDSANGLYSAQASPKPPAAMYTITEGMKVGGKRRVI
Sbjct: 139 NRSIAQPYEFSVGSLPGKERKREFVDSANGLYSAQASPKPPAAMYTITEGMKVGGKRRVI 198

Query: 199 VPPELGYGKKGMNEIPPDAPFELDIELLEVVPPAEK 234
           VPPELGYGKKGMNEIPPDAPFELDIELLEVVPPAEK
Sbjct: 199 VPPELGYGKKGMNEIPPDAPFELDIELLEVVPPAEK 234



>Os07g0188233 Peptidylprolyl isomerase, FKBP-type domain containing protein
          Length = 218

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 80/143 (55%), Gaps = 24/143 (16%)

Query: 86  EDYVTSPDGLKYYDLVEGKGPTAEKGSTVQVHFDCIYRGITAVSSREAKLLAGNRSIAQP 145
            ++ T P+GLKYYD+  G G  A KGS V VH+   ++GIT ++SR+   + G      P
Sbjct: 86  SEFTTLPNGLKYYDITVGSGLKAVKGSRVAVHYVAKWKGITFMTSRQGLGVGG----GTP 141

Query: 146 YEFSVGSLPGKERKREFVDSANGLYSAQASPKPPAAMYTITEGMKVGGKRRVIVPPELGY 205
           Y F +G+    ER         G+                 EGMKVGG+R +IVPPEL Y
Sbjct: 142 YGFDIGN---SERGNVLKGLDLGV-----------------EGMKVGGQRLIIVPPELAY 181

Query: 206 GKKGMNEIPPDAPFELDIELLEV 228
           GKKG+ EIPP+A  ELD+ELL V
Sbjct: 182 GKKGVQEIPPNATIELDVELLSV 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,823,682
Number of extensions: 288152
Number of successful extensions: 739
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)