Os02g0117600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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Os02g0117600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.76 | 0.366 | 12.1 | -0.466 | 0.756 | -0.832 | 0.544 | 9.69 | -0.664 | 21.2 | 26.28 | 4445 | -- | -- |
| 82.01 | 0.425 | 12.3 | -2.63 | 0.766 | 0.289 | 0.594 | -- | -1.08 | 21.9 | 26.28 | 4445 | -- | -- |
| 61.68 | 0.366 | 12 | -0.439 | 0.761 | -0.897 | -- | 10.2 | -0.682 | 21.1 | 26.66 | 4408 | -- | -- |
| 79.48 | 0.415 | 12.3 | -2.68 | 0.724 | 0.301 | -- | -- | -1.04 | 21.1 | 29.13 | 1127 | -- | -- |
| 94.35 | 0.452 | 12 | -0.396 | -- | -0.886 | -- | 10.5 | -0.693 | -- | 27.04 | 4522 | -- | -- |
| 83.22 | 0.428 | 12.3 | -2.59 | 0.748 | -- | 0.544 | -- | -1.07 | 21.4 | -- | -- | -- | -- |
| 84.26 | 0.43 | 12.3 | -2.61 | 0.749 | -- | -- | -- | -1.07 | 21.3 | -- | -- | -- | -- |
| 95.29 | 0.455 | 12.3 | -2.8 | -- | 0.876 | -- | -- | -1.13 | -- | 25.16 | 772 | -- | -- |
| 123.89 | 0.518 | 12.1 | -- | 0.772 | -1.91 | -- | -- | -0.21 | 21.4 | 7.402 | 47520 | -- | -- |
| 116.94 | 0.505 | 12.3 | -2.61 | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
| 264.2 | 0.76 | 12.3 | -- | 0.75 | -- | -- | -- | -0.779 | 21 | -- | -- | -- | -- |
| 158.8 | 0.587 | 12.1 | -- | -- | -1.89 | -- | -- | -0.218 | -- | 7.013 | 47520 | -- | -- |
| 296.55 | 0.804 | 12.2 | -- | -- | -- | -- | -- | -0.783 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.96 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 6 | 59.96 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 24 | 11 |
| 10 | 60.11 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 13 | 60.16 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 15 | 60.27 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 18 | 60.40 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 19 | 60.43 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 20 |
| 20 | 60.44 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 1 | 10 |
| 24 | 60.52 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 8 |
| 41 | 60.67 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 16 |
| 50 | 60.73 | temperature | 25.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 120 | 61.36 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 125 | 61.38 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 126 | 61.38 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 4 | 23 |
| 174 | 61.50 | temperature | 25.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 215 | 61.60 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 217 | 61.60 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 218 | 61.60 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 221 | 61.60 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 286 | 61.80 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 298 | 61.82 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 299 | 61.82 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 311 | 61.86 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 320 | 61.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 330 | 61.91 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 338 | 61.92 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 413 | 62.03 | radiation | 20.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 492 | 62.19 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 493 | 62.19 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 497 | 62.19 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 570 | 62.35 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 605 | 62.42 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 703 | 62.61 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 708 | 62.62 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 826 | 62.80 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 910 | 62.99 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 912 | 63.00 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 915 | 63.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 917 | 63.02 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 922 | 63.03 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 931 | 63.06 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 946 | 63.09 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 977 | 63.21 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 980 | 63.24 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 23 | 2 |