BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0117100 Os02g0117100|AK064929
         (377 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0117100  Conserved hypothetical protein                      682   0.0  

>Os02g0117100 Conserved hypothetical protein
          Length = 377

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/352 (95%), Positives = 336/352 (95%)

Query: 26  CGQSPPVVXXXXXXXXXXXXXXXXCSPRAEAGDVEALRAGVSVYKPRSYDVLVSDAARSL 85
           CGQSPPVV                CSPRAEAGDVEALRAGVSVYKPRSYDVLVSDAARSL
Sbjct: 26  CGQSPPVVAPRLGAFPRRRGGAARCSPRAEAGDVEALRAGVSVYKPRSYDVLVSDAARSL 85

Query: 86  ACAMDEGKTRLEIEFPPLPSNISSYKGSSDEFIDANIQLALAVARKLKELKGTRSCIVFP 145
           ACAMDEGKTRLEIEFPPLPSNISSYKGSSDEFIDANIQLALAVARKLKELKGTRSCIVFP
Sbjct: 86  ACAMDEGKTRLEIEFPPLPSNISSYKGSSDEFIDANIQLALAVARKLKELKGTRSCIVFP 145

Query: 146 DLPEKRRASQLFGTALDSIETATISSLDEVSTGPVNTFFRSMRDTLDFDFADDVEDRWKS 205
           DLPEKRRASQLFGTALDSIETATISSLDEVSTGPVNTFFRSMRDTLDFDFADDVEDRWKS
Sbjct: 146 DLPEKRRASQLFGTALDSIETATISSLDEVSTGPVNTFFRSMRDTLDFDFADDVEDRWKS 205

Query: 206 DEPPSLYIFINCSTRDLSTIEKYVEQFASSVPALLFNLELDTLRSDLGLLGFPPKDLHYR 265
           DEPPSLYIFINCSTRDLSTIEKYVEQFASSVPALLFNLELDTLRSDLGLLGFPPKDLHYR
Sbjct: 206 DEPPSLYIFINCSTRDLSTIEKYVEQFASSVPALLFNLELDTLRSDLGLLGFPPKDLHYR 265

Query: 266 FLSQFTPVFYIRQRDYSKTIAVTPYIVNYSGAVFRQYPGPWQVMLKQADGSYACVAESAA 325
           FLSQFTPVFYIRQRDYSKTIAVTPYIVNYSGAVFRQYPGPWQVMLKQADGSYACVAESAA
Sbjct: 266 FLSQFTPVFYIRQRDYSKTIAVTPYIVNYSGAVFRQYPGPWQVMLKQADGSYACVAESAA 325

Query: 326 RFTLGQAKEELLRVLGLQEEQGSSLEFLRRGYKNATWWEENVDQEKSSAWRT 377
           RFTLGQAKEELLRVLGLQEEQGSSLEFLRRGYKNATWWEENVDQEKSSAWRT
Sbjct: 326 RFTLGQAKEELLRVLGLQEEQGSSLEFLRRGYKNATWWEENVDQEKSSAWRT 377



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,609,555
Number of extensions: 460466
Number of successful extensions: 945
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 944
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 274
Effective length of database: 11,657,759
Effective search space: 3194225966
Effective search space used: 3194225966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)