BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0108100 Os02g0108100|AK106287
         (390 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0108100  Conserved hypothetical protein                      197   7e-51

>Os02g0108100 Conserved hypothetical protein
          Length = 390

 Score =  197 bits (502), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 109/134 (81%), Positives = 109/134 (81%)

Query: 1   PGRQAARARTAGKKAQTPASSDAASTSGELLXXXXXXXXXXXXXXNELPGDTEVGDAERR 60
           PGRQAARARTAGKKAQTPASSDAASTSGELL              NELPGDTEVGDAERR
Sbjct: 1   PGRQAARARTAGKKAQTPASSDAASTSGELLRRGQWRRRGPKRRGNELPGDTEVGDAERR 60

Query: 61  AWTTTRPSLTRLHGGARRRTARPLLSLSGRTAVTSTVGRLRAWRXXXXXXXXXXXAEWRR 120
           AWTTTRPSLTRLHGGARRRTARPLLSLSGRTAVTSTVGRLRAWR           AEWRR
Sbjct: 61  AWTTTRPSLTRLHGGARRRTARPLLSLSGRTAVTSTVGRLRAWRGSGSCGGGVLGAEWRR 120

Query: 121 LSPPPSAGADSPNP 134
           LSPPPSAGADSPNP
Sbjct: 121 LSPPPSAGADSPNP 134




 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 79/192 (41%)

Query: 199 LGGVFLAEVXXXXXXXXXXXXXXXXXXXXXXXXCLPLKAXXXXXXXXXXXXXXXXXQIXX 258
           LGGVFLAEV                        CLPLKA                 QI  
Sbjct: 199 LGGVFLAEVAARPRLPRGRRAAARSSSTGATRPCLPLKAGWSGGPSGDGDDAGLSGQIRP 258

Query: 259 XXXXXXXXXXXXXXXXXXXXXXXXXFPIEPASFSDEDGGGGTDRSGAATSSPAXXXXXXX 318
                                    FPIEPASFSDEDGGGGTDRSGAATSSPA       
Sbjct: 259 RPTGSRRRRRGRTRHRPRAPLLLRAFPIEPASFSDEDGGGGTDRSGAATSSPATSRSVTR 318

Query: 319 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVSLLGSERLNKDVVLRDTSA 378
                                                 NRVSLLGSERLNKDVVLRDTSA
Sbjct: 319 SGRRQRGRRWRGREGTTSWRHALHSASSRRSLCLARARNRVSLLGSERLNKDVVLRDTSA 378

Query: 379 KFLASTTRQRST 390
           KFLASTTRQRST
Sbjct: 379 KFLASTTRQRST 390



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.127    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,156,294
Number of extensions: 205574
Number of successful extensions: 777
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 287
Effective length of database: 11,657,759
Effective search space: 3345776833
Effective search space used: 3345776833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)