BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0106600 Os02g0106600|AK107830
(188 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0106600 Zinc finger, RING-type domain containing protein 208 2e-54
Os01g0866000 Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-) 68 4e-12
Os04g0419500 Zinc finger, RING-type domain containing protein 64 5e-11
Os05g0439000 Similar to RING-H2 finger protein ATL1O (RING-... 64 7e-11
>Os02g0106600 Zinc finger, RING-type domain containing protein
Length = 188
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/165 (66%), Positives = 110/165 (66%)
Query: 1 MAMSPHDQHEHEPDHAHRSPSNGTAATSTIATNRWGPYSGAGDFASNMAVIXXXXXXXXX 60
MAMSPHDQHEHEPDHAHRSPSNGTAATSTIATNRWGPYSGAGDFASNMAVI
Sbjct: 1 MAMSPHDQHEHEPDHAHRSPSNGTAATSTIATNRWGPYSGAGDFASNMAVILAALLAALA 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXXXXXALVYSAAGTKLA 120
ED ALVYSAAGTKLA
Sbjct: 61 LALALNAAVRYLLRRHRRARQQPAAAAAAAEDPEKPPVQEADPPPPPPALVYSAAGTKLA 120
Query: 121 GAAECAICLAEFVDGDTVRVMPVCGHGFHARCIERWLAGGRRSSC 165
GAAECAICLAEFVDGDTVRVMPVCGHGFHARCIERWLAGGRRSSC
Sbjct: 121 GAAECAICLAEFVDGDTVRVMPVCGHGFHARCIERWLAGGRRSSC 165
>Os01g0866000 Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-)
Length = 213
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 5/60 (8%)
Query: 109 ALVYSAAGT-KLAG--AAECAICLAEFVDGDTVRVMPVCGHGFHARCIERWLAGGRRSSC 165
A+V A G +LAG + ECAICL+EF G VRV+P CGHGFHARCI+RWLA R +C
Sbjct: 126 AIVCPAGGLDRLAGCGSTECAICLSEFAQGHRVRVLPRCGHGFHARCIDRWLAA--RQTC 183
>Os04g0419500 Zinc finger, RING-type domain containing protein
Length = 202
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Query: 110 LVYSAAGTKLAGAAE-CAICLAEFVDGDTVRVMPVCGHGFHARCIERWLAGGRRSSC 165
L+YS G KL + CAICL++F DG+ VRV+P C HGFH RCI+RWL RS+C
Sbjct: 101 LLYST-GLKLNTVSPMCAICLSDFEDGEHVRVLPKCNHGFHVRCIDRWLLA--RSTC 154
>Os05g0439000 Similar to RING-H2 finger protein ATL1O (RING-H2 finger protein
ATL11)
Length = 220
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 4/52 (7%)
Query: 116 GTKLAGAA--ECAICLAEFVDGDTVRVMPVCGHGFHARCIERWLAGGRRSSC 165
G +LAG++ EC ICLAEF G+ VRV+P C HGFH RCI+RWLA R +C
Sbjct: 134 GLELAGSSRSECVICLAEFARGEHVRVLPGCNHGFHDRCIDRWLAA--RPTC 183
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,442,886
Number of extensions: 139370
Number of successful extensions: 900
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 10
Length of query: 188
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 93
Effective length of database: 12,075,471
Effective search space: 1123018803
Effective search space used: 1123018803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)