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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0106600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0455) R2 : 0.18
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.53 (0.159) R2dE : 0.178 R2E : 0.18
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.022 (0.098) R2dN8 : 0.000122 R2N8 : 0.00208
σ : 0.849
deviance : 332.36
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.2
memory length : 758
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
313.4 0.832 4.15 -0.943 0.596 1.81 0.442 -2.79 -0.198 1.17 20.5 462 -- --
318.21 0.831 4.09 -0.444 0.563 1.83 0.48 -- -0.0595 1.05 17.44 473 -- --
314.15 0.826 4.15 -0.977 0.632 1.81 -- -2.92 -0.206 1.07 20.39 431 -- --
319.07 0.832 4.09 -0.444 0.546 1.76 -- -- -0.0488 0.604 17.42 485 -- --
324.92 0.84 4.13 -0.889 -- 1.77 -- -1.96 -0.173 -- 21.16 755 -- --
365.27 0.896 4.03 -0.000158 0.773 -- 0.077 -- 0.251 21.5 -- -- -- --
365.29 0.895 4.03 -0.00285 0.773 -- -- -- 0.251 21.5 -- -- -- --
327.65 0.843 4.08 -0.447 -- 1.66 -- -- -0.0516 -- 20.61 760 -- --
323.26 0.837 4.07 -- 0.552 1.51 -- -- 0.025 0.295 18.98 481 -- --
400.44 0.935 4.01 0.00236 -- -- -- -- 0.248 -- -- -- -- --
365.29 0.894 4.03 -- 0.773 -- -- -- 0.251 21.5 -- -- -- --
332.36 0.849 4.06 -- -- 1.53 -- -- 0.022 -- 21.2 758 -- --
400.44 0.934 4.01 -- -- -- -- -- 0.248 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.40 temperature 10 270 > th dose dependent rect. 1 21
9 309.72 temperature 15 90 > th dose dependent rect. 3 20
11 310.09 wind 7 43200 > th dose dependent rect. 8 7
12 310.09 temperature 30 30 < th dose dependent rect. 9 19
14 310.31 wind 7 43200 > th dose dependent rect. 18 21
15 310.32 wind 5 43200 > th dose dependent rect. 5 11
26 310.61 wind 7 43200 > th dose dependent rect. 24 15
31 310.65 wind 7 43200 > th dose dependent rect. 2 13
44 310.94 wind 5 43200 > th dose dependent sin 1 NA
49 311.05 temperature 30 30 < th dose dependent rect. 6 22
50 311.07 radiation 1 14400 > th dose independent rect. 5 1
57 311.15 wind 9 43200 < th dose independent rect. 18 21
59 311.18 radiation 1 14400 < th dose independent rect. 5 1
67 311.26 temperature 20 270 > th dose dependent rect. 10 22
68 311.29 temperature 20 720 > th dose dependent rect. 17 21
72 311.36 wind 7 43200 > th dose independent rect. 23 16
74 311.37 wind 7 43200 > th dose independent sin 4 NA
75 311.41 radiation 20 1440 < th dose dependent rect. 18 11
78 311.44 wind 7 43200 < th dose independent sin 3 NA
87 311.49 temperature 30 270 < th dose dependent rect. 5 22
90 311.51 wind 7 43200 > th dose dependent rect. 8 13
91 311.51 temperature 15 270 > th dose dependent rect. 10 20
95 311.53 wind 7 43200 > th dose independent rect. 2 13
97 311.54 wind 7 43200 < th dose independent rect. 23 17
101 311.56 wind 7 43200 > th dose dependent rect. 5 16
108 311.62 wind 7 43200 > th dose independent rect. 6 9
109 311.62 wind 7 43200 < th dose independent rect. 5 10
127 311.69 wind 7 43200 < th dose independent rect. 2 13
134 311.71 wind 7 43200 > th dose dependent rect. 24 21
135 311.72 wind 7 43200 > th dose dependent rect. 2 19
157 311.83 wind 7 43200 > th dose independent rect. 20 19
162 311.85 wind 9 43200 > th dose independent rect. 18 21
223 312.10 radiation 1 14400 > th dose independent rect. 18 12
248 312.18 wind 1 43200 > th dose dependent rect. 9 1
312 312.31 wind 7 43200 > th dose dependent rect. 9 23
365 312.48 wind 7 43200 > th dose dependent no NA NA
380 312.52 wind 9 43200 < th dose dependent rect. 9 1
422 312.61 wind 7 43200 > th dose dependent rect. 13 23
430 312.64 wind 1 43200 > th dose dependent rect. 9 3
433 312.65 wind 7 43200 > th dose independent rect. 9 3
475 312.81 wind 5 43200 < th dose independent rect. 9 6
480 312.83 wind 9 43200 < th dose dependent rect. 9 3
482 312.84 wind 5 43200 > th dose independent rect. 9 6
501 312.89 wind 7 43200 < th dose independent rect. 9 3
503 312.89 temperature 10 30 > th dose dependent rect. 3 23
569 313.16 wind 9 43200 < th dose independent rect. 5 16
572 313.17 temperature 20 1440 > th dose dependent rect. 17 6
588 313.23 radiation 1 14400 < th dose independent rect. 23 7
591 313.24 radiation 1 14400 < th dose independent rect. 20 10
625 313.34 wind 7 43200 < th dose independent rect. 23 22
637 313.37 wind 9 43200 < th dose independent rect. 7 14
685 313.50 wind 9 43200 < th dose independent rect. 2 19
688 313.51 wind 7 43200 > th dose independent rect. 23 22
694 313.53 wind 9 43200 > th dose independent rect. 8 13
729 313.64 humidity 90 43200 > th dose independent rect. 3 7
732 313.64 wind 9 43200 < th dose dependent rect. 8 6
741 313.68 wind 7 43200 < th dose independent rect. 5 22
748 313.72 radiation 1 14400 < th dose independent rect. 18 13
750 313.72 wind 5 43200 > th dose independent rect. 2 19
788 313.81 wind 5 43200 > th dose independent rect. 4 18
838 313.91 wind 7 43200 > th dose independent rect. 5 22
840 313.91 wind 7 43200 < th dose independent rect. 2 23
844 313.92 wind 7 43200 < th dose independent rect. 13 23
845 313.92 radiation 20 1440 < th dose dependent rect. 18 1
854 313.94 temperature 10 720 > th dose dependent rect. 17 22
855 313.95 wind 7 43200 < th dose independent no NA NA
879 313.98 wind 9 43200 < th dose independent rect. 8 17
901 314.01 wind 3 43200 > th dose dependent rect. 20 1
904 314.02 wind 9 43200 < th dose independent rect. 8 19
922 314.05 wind 9 43200 > th dose independent rect. 8 17
928 314.06 wind 9 43200 > th dose independent rect. 5 16
931 314.06 wind 7 43200 > th dose independent rect. 13 23
954 314.10 wind 9 43200 > th dose independent rect. 8 19
959 314.11 wind 3 43200 > th dose independent rect. 9 2
981 314.13 wind 7 43200 > th dose independent no NA NA
995 314.13 wind 5 43200 > th dose independent rect. 9 22