BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0101100 Os02g0101100|AK068038
(519 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0101100 Initiation factor 3 family protein 899 0.0
>Os02g0101100 Initiation factor 3 family protein
Length = 519
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/519 (85%), Positives = 445/519 (85%)
Query: 1 MMMALRRAVGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVMKRSTKXX 60
MMMALRRAVGIG QVMKRSTK
Sbjct: 1 MMMALRRAVGIGSAAALRSAAYLRRASPSPARPHPLVPPPPAARTFAAPPQVMKRSTKDD 60
Query: 61 XXXGPRINNDITSPFVRLVTDQGHSVVPRHEALQLAARMDLDLVEVHRKSDPPVCKIMDF 120
GPRINNDITSPFVRLVTDQGHSVVPRHEALQLAARMDLDLVEVHRKSDPPVCKIMDF
Sbjct: 61 DDDGPRINNDITSPFVRLVTDQGHSVVPRHEALQLAARMDLDLVEVHRKSDPPVCKIMDF 120
Query: 121 HXXXXXXXXXXXXXXXXXSAIVLRGGENKEVRFKGKTELKDLKVKADGITRLMERGYRVK 180
H SAIVLRGGENKEVRFKGKTELKDLKVKADGITRLMERGYRVK
Sbjct: 121 HKEKYKKDVKEKERLKTKSAIVLRGGENKEVRFKGKTELKDLKVKADGITRLMERGYRVK 180
Query: 181 CMAMPSGNEEEDLGGPLSRLLGLIQDVCIVESGPHLDSKHAYVIVRHVXXXXXXXXXXXX 240
CMAMPSGNEEEDLGGPLSRLLGLIQDVCIVESGPHLDSKHAYVIVRHV
Sbjct: 181 CMAMPSGNEEEDLGGPLSRLLGLIQDVCIVESGPHLDSKHAYVIVRHVKFATKKAGKKAS 240
Query: 241 XXIEDVGKGARKNASELSTVTADSGDETNDCGNGAISDQMDNAPAYVSNEFSMQKDAHDR 300
IEDVGKGARKNASELSTVTADSGDETNDCGNGAISDQMDNAPAYVSNEFSMQKDAHDR
Sbjct: 241 KAIEDVGKGARKNASELSTVTADSGDETNDCGNGAISDQMDNAPAYVSNEFSMQKDAHDR 300
Query: 301 GSRRELSWSKSNPGNYGENMQNVDAGAHRISSSQRAAQTSEGGFGSNNVKSGMEKQEKAN 360
GSRRELSWSKSNPGNYGENMQNVDAGAHRISSSQRAAQTSEGGFGSNNVKSGMEKQEKAN
Sbjct: 301 GSRRELSWSKSNPGNYGENMQNVDAGAHRISSSQRAAQTSEGGFGSNNVKSGMEKQEKAN 360
Query: 361 EDVVPAETNRYASRRQQIRGDNQGLSQDRSPQGHRRNENEVRYPVNDYQRPLQQNNRQSP 420
EDVVPAETNRYASRRQQIRGDNQGLSQDRSPQGHRRNENEVRYPVNDYQRPLQQNNRQSP
Sbjct: 361 EDVVPAETNRYASRRQQIRGDNQGLSQDRSPQGHRRNENEVRYPVNDYQRPLQQNNRQSP 420
Query: 421 RFNDGRLPQEPRRNERGGHIPLNNKQGQFQQMNHPAESAGNGAGYPTPTAKSFGVFSTRK 480
RFNDGRLPQEPRRNERGGHIPLNNKQGQFQQMNHPAESAGNGAGYPTPTAKSFGVFSTRK
Sbjct: 421 RFNDGRLPQEPRRNERGGHIPLNNKQGQFQQMNHPAESAGNGAGYPTPTAKSFGVFSTRK 480
Query: 481 PATSELGKTNGASRTANSDVPKSYGIFSSPRRESGDKSS 519
PATSELGKTNGASRTANSDVPKSYGIFSSPRRESGDKSS
Sbjct: 481 PATSELGKTNGASRTANSDVPKSYGIFSSPRRESGDKSS 519
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,320,697
Number of extensions: 722686
Number of successful extensions: 1451
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1447
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 414
Effective length of database: 11,553,331
Effective search space: 4783079034
Effective search space used: 4783079034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)