Os02g0101100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Initiation factor 3 family protein.
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Os02g0101100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Initiation factor 3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.85 | 0.204 | 9.72 | 0.39 | 0.246 | -0.32 | -0.103 | 0.00148 | 0.268 | 22.6 | 84.54 | 1112 | -- | -- |
| 18.85 | 0.202 | 9.72 | 0.389 | 0.25 | -0.322 | -0.104 | -- | 0.268 | 22.5 | 84.76 | 1099 | -- | -- |
| 18.88 | 0.202 | 9.72 | 0.387 | 0.257 | -0.326 | -- | -0.0873 | 0.267 | 22.4 | 84.94 | 1070 | -- | -- |
| 18.89 | 0.202 | 9.72 | 0.394 | 0.25 | -0.325 | -- | -- | 0.268 | 22.5 | 84.53 | 1099 | -- | -- |
| 21.18 | 0.214 | 9.71 | 0.374 | -- | -0.245 | -- | 0.0596 | 0.285 | -- | 97.09 | 1464 | -- | -- |
| 20.81 | 0.214 | 9.72 | 0.346 | 0.171 | -- | -0.152 | -- | 0.274 | 22 | -- | -- | -- | -- |
| 20.9 | 0.214 | 9.72 | 0.352 | 0.172 | -- | -- | -- | 0.274 | 22 | -- | -- | -- | -- |
| 21.08 | 0.214 | 9.71 | 0.381 | -- | -0.247 | -- | -- | 0.273 | -- | 86 | 1459 | -- | -- |
| 22.67 | 0.222 | 9.72 | -- | 0.268 | -0.327 | -- | -- | 0.245 | 22.3 | 95 | 1013 | -- | -- |
| 22.68 | 0.223 | 9.71 | 0.354 | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
| 24.17 | 0.23 | 9.73 | -- | 0.174 | -- | -- | -- | 0.235 | 22.1 | -- | -- | -- | -- |
| 24.75 | 0.232 | 9.72 | -- | -- | -0.219 | -- | -- | 0.242 | -- | 116.7 | 1490 | -- | -- |
| 25.99 | 0.238 | 9.72 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.30 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 18.52 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 4 | 18.59 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 6 | 18.62 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 7 | 18.64 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 13 | 18.69 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 15 | 18.70 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 16 | 18.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 17 | 18.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 18 | 18.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 20 | 18.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 21 | 18.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 26 | 18.74 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 38 | 18.78 | humidity | 80.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 43 | 18.79 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 48 | 18.81 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 50 | 18.81 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 65 | 18.84 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 70 | 18.84 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 77 | 18.85 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 81 | 18.86 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 8 |
| 89 | 18.87 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 111 | 18.88 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 120 | 18.89 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 137 | 18.91 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 151 | 18.92 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 15 |
| 163 | 18.93 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 164 | 18.93 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 185 | 18.94 | humidity | 50.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 194 | 18.95 | wind | 3.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 205 | 18.95 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 208 | 18.95 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 218 | 18.96 | wind | 7.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 220 | 18.96 | wind | 7.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 233 | 18.97 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 235 | 18.97 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 258 | 18.98 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 290 | 19.00 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 302 | 19.01 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 309 | 19.01 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 319 | 19.02 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 326 | 19.02 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 337 | 19.03 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 366 | 19.03 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 367 | 19.03 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 371 | 19.04 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 408 | 19.05 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 459 | 19.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 473 | 19.07 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 519 | 19.09 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 526 | 19.09 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 527 | 19.09 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 549 | 19.10 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 563 | 19.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 653 | 19.13 | humidity | 80.0 | 720 | < th | dose independent | rect. | 14 | 18 |
| 660 | 19.13 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 679 | 19.13 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 703 | 19.14 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 726 | 19.15 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 747 | 19.15 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 765 | 19.16 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 778 | 19.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 869 | 19.18 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 907 | 19.19 | radiation | 10.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 912 | 19.19 | humidity | 80.0 | 720 | > th | dose independent | rect. | 14 | 16 |
| 925 | 19.19 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 932 | 19.19 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 7 |
| 966 | 19.20 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 19 |
| 974 | 19.20 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 999 | 19.21 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 4 |