BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0967400 Os01g0967400|J075099L21
         (184 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0967400  Similar to Photosystem I P700 chlorophyll a ap...   368   e-102
Os01g0790950  Similar to Photosystem I P700 chlorophyll a ap...   273   4e-74
AK062299                                                          273   4e-74
Os10g0526700                                                      118   2e-27

>Os01g0967400 Similar to Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)
           (PSI-A)
          Length = 184

 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   LAVSLILLKVVLFARSFRLIPDKANLGFRFPCDWLGRGGTYQVSAWDHVFLCLFWMYNSI 60
           LAVSLILLKVVLFARSFRLIPDKANLGFRFPCDWLGRGGTYQVSAWDHVFLCLFWMYNSI
Sbjct: 1   LAVSLILLKVVLFARSFRLIPDKANLGFRFPCDWLGRGGTYQVSAWDHVFLCLFWMYNSI 60

Query: 61  SVVIFHFSWKMQSDVWGTISDQGVVTHITGGNFAQSSTTINGWLRDFLWAQASQVIQSYG 120
           SVVIFHFSWKMQSDVWGTISDQGVVTHITGGNFAQSSTTINGWLRDFLWAQASQVIQSYG
Sbjct: 61  SVVIFHFSWKMQSDVWGTISDQGVVTHITGGNFAQSSTTINGWLRDFLWAQASQVIQSYG 120

Query: 121 SSLSAYGLFFLGAHFVWAFSLMFLFSGMRCWLAAIFGPLIEWIIILAVPASILFINIWEL 180
           SSLSAYGLFFLGAHFVWAFSLMFLFSGMRCWLAAIFGPLIEWIIILAVPASILFINIWEL
Sbjct: 121 SSLSAYGLFFLGAHFVWAFSLMFLFSGMRCWLAAIFGPLIEWIIILAVPASILFINIWEL 180

Query: 181 LYFQ 184
           LYFQ
Sbjct: 181 LYFQ 184



>Os01g0790950 Similar to Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)
           (PSI-A)
          Length = 295

 Score =  273 bits (699), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/147 (93%), Positives = 137/147 (93%)

Query: 5   LILLKVVLFARSFRLIPDKANLGFRFPCDWLGRGGTYQVSAWDHVFLCLFWMYNSISVVI 64
           LILLK VLFARS RLIPDKANLGFRFPCD  GRGGT QVSAWDHVFL LFWMYNSISVVI
Sbjct: 91  LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVI 150

Query: 65  FHFSWKMQSDVWGTISDQGVVTHITGGNFAQSSTTINGWLRDFLWAQASQVIQSYGSSLS 124
           FHFSWKMQSDVWGTISDQGVVTHITGGNFAQSS TINGWLRDFLWAQASQVIQSYGSSLS
Sbjct: 151 FHFSWKMQSDVWGTISDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQVIQSYGSSLS 210

Query: 125 AYGLFFLGAHFVWAFSLMFLFSGMRCW 151
           AYGLFFLGAHFVWAFSLMFLFSG   W
Sbjct: 211 AYGLFFLGAHFVWAFSLMFLFSGRGYW 237



>AK062299 
          Length = 295

 Score =  273 bits (699), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/147 (93%), Positives = 137/147 (93%)

Query: 5   LILLKVVLFARSFRLIPDKANLGFRFPCDWLGRGGTYQVSAWDHVFLCLFWMYNSISVVI 64
           LILLK VLFARS RLIPDKANLGFRFPCD  GRGGT QVSAWDHVFL LFWMYNSISVVI
Sbjct: 91  LILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVI 150

Query: 65  FHFSWKMQSDVWGTISDQGVVTHITGGNFAQSSTTINGWLRDFLWAQASQVIQSYGSSLS 124
           FHFSWKMQSDVWGTISDQGVVTHITGGNFAQSS TINGWLRDFLWAQASQVIQSYGSSLS
Sbjct: 151 FHFSWKMQSDVWGTISDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQVIQSYGSSLS 210

Query: 125 AYGLFFLGAHFVWAFSLMFLFSGMRCW 151
           AYGLFFLGAHFVWAFSLMFLFSG   W
Sbjct: 211 AYGLFFLGAHFVWAFSLMFLFSGRGYW 237



>Os10g0526700 
          Length = 111

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 64/99 (64%), Gaps = 30/99 (30%)

Query: 18  RLIPDKANLGFRFPCDWLGRGGTYQVSAWDHVFLCLFWMYNSISVVIFHFSWKMQSDVWG 77
           RLIPDKANLGFRFPCD  GRGGT                               QSDVWG
Sbjct: 11  RLIPDKANLGFRFPCDGPGRGGT------------------------------CQSDVWG 40

Query: 78  TISDQGVVTHITGGNFAQSSTTINGWLRDFLWAQASQVI 116
           TISDQGVVTHITGGNFAQSS TINGWLRDFLWAQASQ +
Sbjct: 41  TISDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQGV 79



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.332    0.143    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,340,971
Number of extensions: 236848
Number of successful extensions: 531
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 4
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 153 (63.5 bits)