Os01g0967400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Photosystem I P700 chlorophyll a apoprotein A1 (PsaA) (PSI-A).
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Os01g0967400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Photosystem I P700 chlorophyll a apoprotein A1 (PsaA) (PSI-A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.42 | 0.343 | 9.36 | -1 | 0.672 | 0.77 | 0.295 | 1.78 | 0.249 | 7.35 | 66.01 | 6210 | -- | -- |
| 57.93 | 0.354 | 9.36 | -1 | 0.657 | 0.781 | 0.424 | -- | 0.238 | 7.44 | 66.14 | 6216 | -- | -- |
| 53.65 | 0.341 | 9.36 | -0.993 | 0.673 | 0.768 | -- | 1.82 | 0.248 | 7.29 | 66.33 | 6210 | -- | -- |
| 58.33 | 0.356 | 9.37 | -0.997 | 0.659 | 0.831 | -- | -- | 0.237 | 7.4 | 66.3 | 6210 | -- | -- |
| 75.85 | 0.406 | 9.36 | -1 | -- | 0.959 | -- | 1.74 | 0.271 | -- | 66 | 6470 | -- | -- |
| 67.82 | 0.386 | 9.36 | -0.918 | 0.713 | -- | 0.36 | -- | 0.261 | 7.35 | -- | -- | -- | -- |
| 68.17 | 0.387 | 9.36 | -0.911 | 0.714 | -- | -- | -- | 0.26 | 7.28 | -- | -- | -- | -- |
| 79.53 | 0.415 | 9.39 | -1.01 | -- | 0.971 | -- | -- | 0.238 | -- | 67 | 6427 | -- | -- |
| 82.51 | 0.423 | 9.34 | -- | 0.691 | 0.704 | -- | -- | 0.358 | 7.07 | 67.15 | 5476 | -- | -- |
| 95.24 | 0.456 | 9.38 | -0.898 | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
| 90.03 | 0.444 | 9.34 | -- | 0.706 | -- | -- | -- | 0.362 | 7.36 | -- | -- | -- | -- |
| 93.17 | 0.45 | 9.34 | -- | -- | 0.929 | -- | -- | 0.453 | -- | 70.56 | 2102 | -- | -- |
| 116.53 | 0.504 | 9.36 | -- | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 2 | 52.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 3 | 52.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 4 | 52.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 8 | 52.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 9 | 52.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 10 | 52.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 15 | 53.05 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 20 | 53.11 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 21 | 53.11 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 34 | 53.18 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 36 | 53.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 37 | 53.23 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 38 | 53.23 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 41 | 53.24 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 42 | 53.24 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 43 | 53.26 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 44 | 53.26 | wind | 3.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 45 | 53.26 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 55 | 53.31 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 62 | 53.40 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 66 | 53.44 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 67 | 53.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 68 | 53.44 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 69 | 53.45 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 70 | 53.46 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 79 | 53.50 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 21 |
| 103 | 53.57 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 135 | 53.65 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 137 | 53.65 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 140 | 53.66 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 180 | 53.77 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 197 | 53.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 17 |
| 203 | 53.83 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 268 | 54.03 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 269 | 54.04 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 358 | 54.11 | humidity | 60.0 | 14400 | < th | dose dependent | no | NA | NA |
| 498 | 54.27 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 499 | 54.28 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 516 | 54.32 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 535 | 54.36 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 550 | 54.39 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 555 | 54.39 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 9 |
| 563 | 54.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 566 | 54.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 576 | 54.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 641 | 54.51 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 650 | 54.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 658 | 54.54 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 10 |
| 690 | 54.59 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 723 | 54.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 769 | 54.69 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 773 | 54.70 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 792 | 54.74 | humidity | 60.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 805 | 54.76 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 843 | 54.81 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 962 | 54.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 968 | 54.94 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 18 | 1 |