BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0965600 Os01g0965600|AK073409
         (263 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0965600  Conserved hypothetical protein                      475   e-134

>Os01g0965600 Conserved hypothetical protein
          Length = 263

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/263 (89%), Positives = 235/263 (89%)

Query: 1   MGSKDSQVEATLQDGNKXXXXXXXXXXXXRGENDETLTLARSLEQQAKVXXXXXXXXXXX 60
           MGSKDSQVEATLQDGNK            RGENDETLTLARSLEQQAKV           
Sbjct: 1   MGSKDSQVEATLQDGNKEDEEDDWEAIADRGENDETLTLARSLEQQAKVSPSSSSEKIST 60

Query: 61  XXXXXKRRGRGSFLYDKSVLYSDQCGLENDMDEQESNDQSGSKGRVDEQKHKSNAAAKQY 120
                KRRGRGSFLYDKSVLYSDQCGLENDMDEQESNDQSGSKGRVDEQKHKSNAAAKQY
Sbjct: 61  PSSGPKRRGRGSFLYDKSVLYSDQCGLENDMDEQESNDQSGSKGRVDEQKHKSNAAAKQY 120

Query: 121 GTRHVLVLYDFPPSTLAADLEKIFDKFGDHGVAIRWVNDTVALAVFRTPSAANEAQACIP 180
           GTRHVLVLYDFPPSTLAADLEKIFDKFGDHGVAIRWVNDTVALAVFRTPSAANEAQACIP
Sbjct: 121 GTRHVLVLYDFPPSTLAADLEKIFDKFGDHGVAIRWVNDTVALAVFRTPSAANEAQACIP 180

Query: 181 PRYKVRPLKEDDDLLTKNDGIDLEPPTPRPKTSARTAQRLIAHGMGLRQFTNFGSDELKK 240
           PRYKVRPLKEDDDLLTKNDGIDLEPPTPRPKTSARTAQRLIAHGMGLRQFTNFGSDELKK
Sbjct: 181 PRYKVRPLKEDDDLLTKNDGIDLEPPTPRPKTSARTAQRLIAHGMGLRQFTNFGSDELKK 240

Query: 241 QEEARRSRIAARQALRDDAWGSD 263
           QEEARRSRIAARQALRDDAWGSD
Sbjct: 241 QEEARRSRIAARQALRDDAWGSD 263



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,765,169
Number of extensions: 376004
Number of successful extensions: 811
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)