Os01g0965600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0965600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.23 | 0.171 | 11.4 | 0.423 | 0.559 | -0.478 | 0.301 | 0.598 | 0.13 | 3.41 | 40.09 | 270 | -- | -- |
| 13.46 | 0.171 | 11.4 | 0.42 | 0.56 | -0.466 | 0.226 | -- | 0.128 | 3.39 | 40.43 | 269 | -- | -- |
| 13.47 | 0.171 | 11.4 | 0.421 | 0.564 | -0.48 | -- | 0.399 | 0.124 | 3.39 | 40.46 | 273 | -- | -- |
| 13.54 | 0.171 | 11.4 | 0.409 | 0.561 | -0.473 | -- | -- | 0.124 | 3.41 | 40.43 | 269 | -- | -- |
| 19.62 | 0.206 | 11.4 | 0.466 | -- | -0.66 | -- | 0.00905 | 0.137 | -- | 16.67 | 282 | -- | -- |
| 15.61 | 0.185 | 11.4 | 0.399 | 0.692 | -- | 0.157 | -- | 0.0906 | 3.27 | -- | -- | -- | -- |
| 15.69 | 0.185 | 11.4 | 0.396 | 0.692 | -- | -- | -- | 0.0897 | 3.27 | -- | -- | -- | -- |
| 16.42 | 0.189 | 11.4 | 0.39 | -- | -0.632 | -- | -- | 0.126 | -- | 5.58 | 412 | -- | -- |
| 17.64 | 0.196 | 11.4 | -- | 0.577 | -0.397 | -- | -- | 0.0773 | 3.35 | 39.12 | 265 | -- | -- |
| 42.82 | 0.306 | 11.4 | 0.426 | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
| 19.83 | 0.208 | 11.4 | -- | 0.7 | -- | -- | -- | 0.0456 | 3.27 | -- | -- | -- | -- |
| 20.08 | 0.209 | 11.4 | -- | -- | -0.668 | -- | -- | 0.0844 | -- | 6.806 | 413 | -- | -- |
| 47.6 | 0.322 | 11.4 | -- | -- | -- | -- | -- | 0.0607 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 3 | 12.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 4 | 12.57 | temperature | 25 | 30 | < th | dose dependent | sin | 11 | NA |
| 33 | 12.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 61 | 12.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 67 | 12.82 | temperature | 10 | 30 | > th | dose dependent | sin | 11 | NA |
| 340 | 13.18 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 6 |
| 382 | 13.22 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 23 |
| 385 | 13.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 386 | 13.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 401 | 13.23 | radiation | 40 | 270 | > th | dose independent | sin | 0 | NA |
| 403 | 13.23 | radiation | 40 | 270 | > th | dose independent | no | NA | NA |
| 672 | 13.31 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 695 | 13.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 701 | 13.34 | radiation | 40 | 270 | < th | dose independent | rect. | 24 | 23 |
| 780 | 13.38 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 782 | 13.39 | radiation | 20 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 794 | 13.40 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 3 |
| 827 | 13.41 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 829 | 13.41 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 6 |
| 953 | 13.46 | radiation | 10 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 1000 | 13.48 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 11 |