BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0951400 Os01g0951400|AF210325
         (137 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0951400  Similar to Uridine 5\'-monophosphate synthase ...    78   2e-15

>Os01g0951400 Similar to Uridine 5\'-monophosphate synthase (UMP synthase)
           [Includes: Orotate phosphoribosyltransferase (EC
           2.4.2.10) (OPRtase)
          Length = 137

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 54/137 (39%)

Query: 1   GAFVLKSGITSPIYLDLRMLVAHPRLLSTVASLLGSLXXXXXXXXXXXXXXXXXXXXXXX 60
           GAFVLKSGITSPIYLDLRMLVAHPRLLSTVASLLGSL                       
Sbjct: 1   GAFVLKSGITSPIYLDLRMLVAHPRLLSTVASLLGSLPATRRAHRRGPRHHGLLRARDRR 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAHDAHXXXXXXXXXXXXXXXXXXXX 120
                                             LAHDAH                    
Sbjct: 61  ATPRGRARRRRRRRGHRPRAGREGEPRRERGRAPLAHDAHGGARRPREAREAGRGEGPGG 120

Query: 121 XXXXXXKQEDGCAGTAG 137
                 KQEDGCAGTAG
Sbjct: 121 EAIPRRKQEDGCAGTAG 137



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,531,743
Number of extensions: 21073
Number of successful extensions: 21
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)