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Os01g0951400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uridine 5'-monophosphate synthase (UMP synthase) [Includes: Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRtase); Orotidine 5'- phosphate decarboxylase (EC 4.1.1.23) (OMPdecase)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.37 | 0.267 | 9.47 | 1.51 | 1.23 | -0.663 | -0.493 | -0.354 | 0.273 | 23.2 | 29.72 | 376 | -- | -- |
| 32.39 | 0.265 | 9.47 | 1.54 | 1.23 | -0.697 | -0.483 | -- | 0.28 | 23.1 | 29.79 | 379 | -- | -- |
| 33.39 | 0.269 | 9.47 | 1.52 | 1.23 | -0.662 | -- | -0.376 | 0.273 | 23.2 | 29.74 | 390 | -- | -- |
| 33.4 | 0.269 | 9.47 | 1.56 | 1.23 | -0.703 | -- | -- | 0.278 | 23.2 | 29.8 | 390 | -- | -- |
| 119.12 | 0.511 | 9.44 | 1.55 | -- | -0.654 | -- | -0.288 | 0.306 | -- | 29.74 | 390 | -- | -- |
| 43.5 | 0.309 | 9.46 | 1.44 | 1.23 | -- | -0.413 | -- | 0.294 | 24 | -- | -- | -- | -- |
| 44.22 | 0.311 | 9.46 | 1.45 | 1.23 | -- | -- | -- | 0.296 | 0.0205 | -- | -- | -- | -- |
| 99.61 | 0.465 | 9.39 | 1.67 | -- | -0.655 | -- | -- | 0.491 | -- | 26.4 | 26 | -- | -- |
| 95.83 | 0.456 | 9.5 | -- | 1.27 | -0.434 | -- | -- | 0.128 | 23.6 | 30.5 | 466 | -- | -- |
| 139.33 | 0.552 | 9.43 | 1.49 | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
| 100 | 0.468 | 9.5 | -- | 1.25 | -- | -- | -- | 0.134 | 0.0864 | -- | -- | -- | -- |
| 171.94 | 0.611 | 9.41 | -- | -- | -0.569 | -- | -- | 0.387 | -- | 26.48 | 25 | -- | -- |
| 198.14 | 0.657 | 9.47 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.31 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 17 |
| 4 | 31.88 | temperature | 30 | 270 | < th | dose independent | sin | 20 | NA |
| 8 | 31.96 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 23 |
| 9 | 31.98 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 16 |
| 14 | 32.14 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 13 |
| 15 | 32.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 19 | 32.22 | temperature | 30 | 720 | < th | dose independent | sin | 9 | NA |
| 32 | 32.34 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 53 | 32.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 60 | 32.61 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 10 |
| 62 | 32.61 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 23 |
| 89 | 32.81 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 18 |
| 113 | 32.89 | temperature | 25 | 270 | > th | dose dependent | sin | 19 | NA |
| 122 | 32.91 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |
| 127 | 32.92 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 8 |
| 135 | 32.94 | temperature | 30 | 270 | > th | dose independent | sin | 20 | NA |
| 142 | 32.95 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 16 |
| 145 | 32.97 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 148 | 32.97 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |
| 241 | 32.98 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 256 | 33.04 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 6 |
| 290 | 33.11 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 320 | 33.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 408 | 33.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 413 | 33.31 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 9 |
| 430 | 33.34 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 8 |
| 495 | 33.40 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 496 | 33.40 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 23 |
| 522 | 33.44 | temperature | 15 | 270 | > th | dose dependent | sin | 19 | NA |
| 554 | 33.47 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 575 | 33.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 10 |
| 736 | 33.69 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 2 |
| 762 | 33.73 | temperature | 30 | 720 | > th | dose independent | sin | 9 | NA |
| 864 | 33.87 | temperature | 25 | 720 | > th | dose dependent | sin | 5 | NA |
| 913 | 33.94 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 19 |
| 950 | 33.96 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 17 |
| 956 | 33.97 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 2 |
| 966 | 33.97 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 1000 | 34.00 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 22 |
