BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0937900 Os01g0937900|Os01g0937900
         (158 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0937900  Conserved hypothetical protein                       69   1e-12

>Os01g0937900 Conserved hypothetical protein
          Length = 158

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 48/96 (50%)

Query: 30  RTSAISAAPEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPDIMPLLPSPGPDSDGSAE 89
           RTSAISAAPEY                            LSPDIMPLLPSPGPDSDGSAE
Sbjct: 30  RTSAISAAPEYPRLPTGPGHGGGRHAAPAPAAVLPPAPALSPDIMPLLPSPGPDSDGSAE 89

Query: 90  APSDVMPTIXXXXXXXXXXXXXXXXXXXXFGSAPAV 125
           APSDVMPTI                    FGSAPAV
Sbjct: 90  APSDVMPTIPSSPSPPNPDALLPDSALAPFGSAPAV 125



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,280,311
Number of extensions: 53079
Number of successful extensions: 202
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 65
Effective length of database: 12,179,899
Effective search space: 791693435
Effective search space used: 791693435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)