BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0936700 Os01g0936700|AK107072
(509 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0936700 Conserved hypothetical protein 387 e-107
>Os01g0936700 Conserved hypothetical protein
Length = 509
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 263/509 (51%), Positives = 263/509 (51%)
Query: 1 MGCGGSKEAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MGCGGSKEAVA
Sbjct: 1 MGCGGSKEAVATGNTVGSTGGRSSRRLFRRKSSVVAAANAAPSHAPPPPSDESSAAAVVK 60
Query: 61 XXXXXXXXXGKGKATPKEKAIDEEKKDVEESTTAAAADEVVVKDTGXXXXXXXXXXXXXX 120
GKGKATPKEKAIDEEKKDVEESTTAAAADEVVVKDTG
Sbjct: 61 ESSVNEEVKGKGKATPKEKAIDEEKKDVEESTTAAAADEVVVKDTGVVIVEKTTTAAAAK 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXTDDKKKEKVIPTKVAIDEKKEDVVVPMKEEFVKEK 180
TDDKKKEKVIPTKVAIDEKKEDVVVPMKEEFVKEK
Sbjct: 121 ATPAAVKKIVEEKKKEEAKNKQEAVTDDKKKEKVIPTKVAIDEKKEDVVVPMKEEFVKEK 180
Query: 181 EKITDAKNDVASTENVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
EKITDAKNDVASTENVAAV
Sbjct: 181 EKITDAKNDVASTENVAAVDEKIKAEEDKNKNKNDDEVVATATMEAAVEEEDDDEAALAE 240
Query: 241 XXXXXXXXXXXXXXXSITFAVAPVAEDDEGSVTFPGARARPVVANADEVHQEXXXXXXXX 300
SITFAVAPVAEDDEGSVTFPGARARPVVANADEVHQE
Sbjct: 241 DDDDDDDDEQPNDDESITFAVAPVAEDDEGSVTFPGARARPVVANADEVHQEDDVTSVTS 300
Query: 301 XXXXXXXLENDTXXXXXXXXXXXXXXXXXXXXXXQLEQPSSSKSNNGEMEAVAGVDQAED 360
LENDT QLEQPSSSKSNNGEMEAVAGVDQAED
Sbjct: 301 PTTAPATLENDTSSSAAAAFPAAVPAPVAGEEVAQLEQPSSSKSNNGEMEAVAGVDQAED 360
Query: 361 AKKETSNIEAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVISRDXXXXXXXXXXXXXX 420
AKKETSNIEAIN AVISRD
Sbjct: 361 AKKETSNIEAINVEQEEIKVEEEEEKIIVSQETEEEEEKSAVISRDEITKVEVEREEIKV 420
Query: 421 XXXXXXXXXXXXXXKSIAVSKDDDGQSDGKQTIELKEAMTATKTDEKGEEQVAKDKKDDE 480
KSIAVSKDDDGQSDGKQTIELKEAMTATKTDEKGEEQVAKDKKDDE
Sbjct: 421 EHEEIIVSQETEEEKSIAVSKDDDGQSDGKQTIELKEAMTATKTDEKGEEQVAKDKKDDE 480
Query: 481 QEQQATAAPIESPKQEQQATADPIEAPLN 509
QEQQATAAPIESPKQEQQATADPIEAPLN
Sbjct: 481 QEQQATAAPIESPKQEQQATADPIEAPLN 509
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.298 0.118 0.300
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,680,157
Number of extensions: 235474
Number of successful extensions: 1420
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1416
Number of HSP's successfully gapped: 3
Length of query: 509
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 404
Effective length of database: 11,553,331
Effective search space: 4667545724
Effective search space used: 4667545724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 158 (65.5 bits)