BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0934300 Os01g0934300|AK066698
         (829 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0934300  Similar to Flowering-time protein isoform beta     1560   0.0  

>Os01g0934300 Similar to Flowering-time protein isoform beta
          Length = 829

 Score = 1560 bits (4038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 772/829 (93%), Positives = 772/829 (93%)

Query: 1   DTRSDISSKARNXXXXXXXXXXXXQALKKSQKDLICKQRISEILRDESWKSEVDITEDIL 60
           DTRSDISSKARN            QALKKSQKDLICKQRISEILRDESWKSEVDITEDIL
Sbjct: 1   DTRSDISSKARNLLSRLSKVLVRSQALKKSQKDLICKQRISEILRDESWKSEVDITEDIL 60

Query: 61  ALTDDASESRMPEPRKTPLLLTASADESNKKSSLQTKSKEKRKVLLVEHPNRKAAGKNVN 120
           ALTDDASESRMPEPRKTPLLLTASADESNKKSSLQTKSKEKRKVLLVEHPNRKAAGKNVN
Sbjct: 61  ALTDDASESRMPEPRKTPLLLTASADESNKKSSLQTKSKEKRKVLLVEHPNRKAAGKNVN 120

Query: 121 PVRSTSTNNSRPLSADDIQKAKMRAMFMQEKYGKVDTSKVIEKPHMMEIQKPSGLVDSNV 180
           PVRSTSTNNSRPLSADDIQKAKMRAMFMQEKYGKVDTSKVIEKPHMMEIQKPSGLVDSNV
Sbjct: 121 PVRSTSTNNSRPLSADDIQKAKMRAMFMQEKYGKVDTSKVIEKPHMMEIQKPSGLVDSNV 180

Query: 181 PLVPRTPLTSIIKQPVDPSPSTSKQSTLSPPDKPEIAVSLKLNVTAKENFIEKLDSKRVI 240
           PLVPRTPLTSIIKQPVDPSPSTSKQSTLSPPDKPEIAVSLKLNVTAKENFIEKLDSKRVI
Sbjct: 181 PLVPRTPLTSIIKQPVDPSPSTSKQSTLSPPDKPEIAVSLKLNVTAKENFIEKLDSKRVI 240

Query: 241 WQIPPEVWIDPAWSLGAGENSKEFEVQTQRNRREKETFYASLKDIPLNPKGPWDVEMDFD 300
           WQIPPEVWIDPAWSLGAGENSKEFEVQTQRNRREKETFYASLKDIPLNPKGPWDVEMDFD
Sbjct: 241 WQIPPEVWIDPAWSLGAGENSKEFEVQTQRNRREKETFYASLKDIPLNPKGPWDVEMDFD 300

Query: 301 DSLTPEIPIEQPPDADAMETDSVSTAPPNIVVPVVDKQIGSTSSVSPAVAAGANGATSEP 360
           DSLTPEIPIEQPPDADAMETDSVSTAPPNIVVPVVDKQIGSTSSVSPAVAAGANGATSEP
Sbjct: 301 DSLTPEIPIEQPPDADAMETDSVSTAPPNIVVPVVDKQIGSTSSVSPAVAAGANGATSEP 360

Query: 361 DLELLAVLLKNPQLVFALTSNQGGTLPSEQTVALLDMLKQTGLGLSELVNSLANNSGVQK 420
           DLELLAVLLKNPQLVFALTSNQGGTLPSEQTVALLDMLKQTGLGLSELVNSLANNSGVQK
Sbjct: 361 DLELLAVLLKNPQLVFALTSNQGGTLPSEQTVALLDMLKQTGLGLSELVNSLANNSGVQK 420

Query: 421 EPESGPEAIPASLPSPTPPKDLIARDGWSSEFPSQVRTQNLQHAHLPNRANAPPXXXXXX 480
           EPESGPEAIPASLPSPTPPKDLIARDGWSSEFPSQVRTQNLQHAHLPNRANAPP      
Sbjct: 421 EPESGPEAIPASLPSPTPPKDLIARDGWSSEFPSQVRTQNLQHAHLPNRANAPPVASSVQ 480

Query: 481 XXXXXXXXXLPSQPYASASALPAQTRTNMTSLPQSMISVNPSTQHVAPMNNLLSRATVHQ 540
                    LPSQPYASASALPAQTRTNMTSLPQSMISVNPSTQHVAPMNNLLSRATVHQ
Sbjct: 481 QSFSNVVSSLPSQPYASASALPAQTRTNMTSLPQSMISVNPSTQHVAPMNNLLSRATVHQ 540

Query: 541 HTQSYALTSDXXXXXXXXXXXXNKLAHEVQXXXXXXXXXXXXXXXXXXYTSYTWQSSVAT 600
           HTQSYALTSD            NKLAHEVQ                  YTSYTWQSSVAT
Sbjct: 541 HTQSYALTSDPVAVAVHHQPAVNKLAHEVQSISHPAVSHSSVAESHASYTSYTWQSSVAT 600

Query: 601 IAATGRNATPDRWAAPARTTNSFNAAPSNSNHVTYPNQNAYSNHSTQATTYNSYGSAPVS 660
           IAATGRNATPDRWAAPARTTNSFNAAPSNSNHVTYPNQNAYSNHSTQATTYNSYGSAPVS
Sbjct: 601 IAATGRNATPDRWAAPARTTNSFNAAPSNSNHVTYPNQNAYSNHSTQATTYNSYGSAPVS 660

Query: 661 SHSLHPGQGLDRNGYTHAAEYQTTMARDALWRNSRSPELGAGAVYGSSSQGYVPEPSRQW 720
           SHSLHPGQGLDRNGYTHAAEYQTTMARDALWRNSRSPELGAGAVYGSSSQGYVPEPSRQW
Sbjct: 661 SHSLHPGQGLDRNGYTHAAEYQTTMARDALWRNSRSPELGAGAVYGSSSQGYVPEPSRQW 720

Query: 721 NYGQQSYNPEPYSRQWSSGQQSYNTVTAEPSRQWSSGQQSYSNPAEPSRQWSSSAHAQPS 780
           NYGQQSYNPEPYSRQWSSGQQSYNTVTAEPSRQWSSGQQSYSNPAEPSRQWSSSAHAQPS
Sbjct: 721 NYGQQSYNPEPYSRQWSSGQQSYNTVTAEPSRQWSSGQQSYSNPAEPSRQWSSSAHAQPS 780

Query: 781 YNPEPSRPWNSGHQSQNPEASRQWSHHHGKQERYNPTDGRNSYDQHWRR 829
           YNPEPSRPWNSGHQSQNPEASRQWSHHHGKQERYNPTDGRNSYDQHWRR
Sbjct: 781 YNPEPSRPWNSGHQSQNPEASRQWSHHHGKQERYNPTDGRNSYDQHWRR 829



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.122    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,878,235
Number of extensions: 1377745
Number of successful extensions: 5106
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 5082
Number of HSP's successfully gapped: 2
Length of query: 829
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 720
Effective length of database: 11,344,475
Effective search space: 8168022000
Effective search space used: 8168022000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 160 (66.2 bits)