BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0933600 Os01g0933600|AK067040
         (214 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0933600  Conserved hypothetical protein                      333   5e-92
Os12g0129600                                                       72   3e-13

>Os01g0933600 Conserved hypothetical protein
          Length = 214

 Score =  333 bits (854), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 171/214 (79%), Positives = 171/214 (79%)

Query: 1   MHPVVSPLPSCTDLPPAPGSHPLRPPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSRG 60
           MHPVVSPLPSCTDLPPAPGSHPLRPPLA                            CSRG
Sbjct: 1   MHPVVSPLPSCTDLPPAPGSHPLRPPLARIRHWRRREGWIRRPLLLPHRSRHLPAPCSRG 60

Query: 61  SAANDDGRGGPSSLSYGDNNDWWTWADPVPGICCGGDSRVAEDDIMCDFLLKLLRAGSMV 120
           SAANDDGRGGPSSLSYGDNNDWWTWADPVPGICCGGDSRVAEDDIMCDFLLKLLRAGSMV
Sbjct: 61  SAANDDGRGGPSSLSYGDNNDWWTWADPVPGICCGGDSRVAEDDIMCDFLLKLLRAGSMV 120

Query: 121 GTDAALLQELESRAVHTSPSQLSRPGYGXXXXXXXXXXXXXXXPMSLTRRRFQPQPPSME 180
           GTDAALLQELESRAVHTSPSQLSRPGYG               PMSLTRRRFQPQPPSME
Sbjct: 121 GTDAALLQELESRAVHTSPSQLSRPGYGRLTSRRSRPRRACQRPMSLTRRRFQPQPPSME 180

Query: 181 AHQISTWILLGYCAVTQVCQTFMWHQHLSWKLKL 214
           AHQISTWILLGYCAVTQVCQTFMWHQHLSWKLKL
Sbjct: 181 AHQISTWILLGYCAVTQVCQTFMWHQHLSWKLKL 214



>Os12g0129600 
          Length = 166

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 50/83 (60%), Gaps = 6/83 (7%)

Query: 70  GPSSLSYGDNNDWWTWADPVPGICCGGDS------RVAEDDIMCDFLLKLLRAGSMVGTD 123
           GP SL YGD+ +  TWAD    I  GG         V +D I CDFLLKLLRAGSMVG D
Sbjct: 3   GPGSLPYGDDGNGCTWADLASPIYGGGGEVVDDGITVVDDGITCDFLLKLLRAGSMVGAD 62

Query: 124 AALLQELESRAVHTSPSQLSRPG 146
           AALL ELESRA   S  +L   G
Sbjct: 63  AALLHELESRAAVVSLCRLRALG 85



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,867,836
Number of extensions: 300023
Number of successful extensions: 1231
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1229
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)