Os01g0933600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0933600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.44 | 0.295 | 9.57 | -0.712 | 0.774 | 0.849 | -0.446 | 1.28 | 0.0287 | 3.56 | 28.28 | 6 | -- | -- |
| 41.35 | 0.302 | 9.54 | -0.496 | 0.795 | 0.807 | 0.0235 | -- | 0.0805 | 3.61 | 28.28 | 6 | -- | -- |
| 39.84 | 0.296 | 9.56 | -0.663 | 0.812 | 0.837 | -- | 0.986 | 0.0487 | 3.61 | 26.94 | 5 | -- | -- |
| 41.35 | 0.301 | 9.54 | -0.496 | 0.792 | 0.808 | -- | -- | 0.0793 | 3.61 | 28.43 | 5 | -- | -- |
| 62.8 | 0.369 | 9.54 | -0.553 | -- | 1.6 | -- | 1.42 | 0.114 | -- | 31.94 | 16 | -- | -- |
| 50.6 | 0.333 | 9.58 | -0.687 | 1.04 | -- | 0.0908 | -- | -0.0873 | 3.24 | -- | -- | -- | -- |
| 50.63 | 0.333 | 9.58 | -0.689 | 1.04 | -- | -- | -- | -0.0878 | 3.23 | -- | -- | -- | -- |
| 64.47 | 0.374 | 9.52 | -0.29 | -- | 1.63 | -- | -- | 0.19 | -- | 32.18 | 6 | -- | -- |
| 47.2 | 0.322 | 9.52 | -- | 0.725 | 1.01 | -- | -- | 0.17 | 3.75 | 28.43 | 5 | -- | -- |
| 111.63 | 0.494 | 9.58 | -0.645 | -- | -- | -- | -- | -0.0605 | -- | -- | -- | -- | -- |
| 63.14 | 0.372 | 9.56 | -- | 1.02 | -- | -- | -- | -0.0111 | 3.23 | -- | -- | -- | -- |
| 66.63 | 0.38 | 9.52 | -- | -- | 1.71 | -- | -- | 0.211 | -- | 32.43 | 37 | -- | -- |
| 122.59 | 0.517 | 9.56 | -- | -- | -- | -- | -- | 0.011 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.54 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 4 | 35.99 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 6 | 36.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 8 | 36.29 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 17 |
| 17 | 36.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 26 | 36.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 28 | 36.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 53 | 37.11 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 7 |
| 89 | 37.51 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 102 | 37.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 152 | 38.21 | temperature | 25 | 270 | > th | dose independent | sin | 11 | NA |
| 153 | 38.21 | temperature | 25 | 270 | < th | dose independent | sin | 12 | NA |
| 164 | 38.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 172 | 38.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 176 | 38.39 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 13 |
| 201 | 38.57 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 5 |
| 213 | 38.64 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 7 |
| 237 | 38.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 2 |
| 301 | 39.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 323 | 39.33 | temperature | 20 | 90 | > th | dose dependent | sin | 9 | NA |
| 337 | 39.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 394 | 39.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 396 | 39.64 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 22 |
| 404 | 39.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 420 | 39.74 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 441 | 39.80 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 461 | 39.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 478 | 39.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 4 |
| 524 | 40.00 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 21 |
| 532 | 40.02 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 536 | 40.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 557 | 40.07 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 23 |
| 558 | 40.07 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 572 | 40.11 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 585 | 40.14 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 21 |
| 604 | 40.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 611 | 40.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 618 | 40.24 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 648 | 40.30 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 677 | 40.34 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 689 | 40.36 | temperature | 25 | 270 | < th | dose independent | rect. | 19 | 23 |
| 717 | 40.41 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 732 | 40.43 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 22 |
| 733 | 40.43 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 737 | 40.44 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 13 |
| 762 | 40.49 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 17 |
| 768 | 40.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 780 | 40.51 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 802 | 40.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 818 | 40.57 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 15 |
| 819 | 40.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 829 | 40.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 857 | 40.64 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 888 | 40.68 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 18 |
| 898 | 40.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 902 | 40.70 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 19 |
| 989 | 40.85 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 20 |
| 995 | 40.86 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 2 |