BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0917100 Os01g0917100|AK107234
         (220 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0917100  Conserved hypothetical protein                      243   8e-65

>Os01g0917100 Conserved hypothetical protein
          Length = 220

 Score =  243 bits (620), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 129/189 (68%)

Query: 32  SSPMYYTSDDEDLPEIVLTXXXXXXXRTGTRSLRMHASPPDYGXXXXXXXXXXXXXXXXX 91
           SSPMYYTSDDEDLPEIVLT       RTGTRSLRMHASPPDYG                 
Sbjct: 32  SSPMYYTSDDEDLPEIVLTPPAPAPPRTGTRSLRMHASPPDYGRRRTNRPRRVARTRSPP 91

Query: 92  XXXXXXXXXXXXXXXXXXXXXXXFYMVGSPPDVITATGEGPGGRTVAGFRCRRLTSTRTL 151
                                  FYMVGSPPDVITATGEGPGGRTVAGFRCRRLTSTRTL
Sbjct: 92  VVQEAEREPPAPQQPAAVVVERVFYMVGSPPDVITATGEGPGGRTVAGFRCRRLTSTRTL 151

Query: 152 VDGEDXXXXXXXXXXXXXLVMCSCHGAPFTHAEFLLHAGGTDLGRNVTGYPWLGDEMELT 211
           VDGED             LVMCSCHGAPFTHAEFLLHAGGTDLGRNVTGYPWLGDEMELT
Sbjct: 152 VDGEDAAARAAAISGARALVMCSCHGAPFTHAEFLLHAGGTDLGRNVTGYPWLGDEMELT 211

Query: 212 PPGAGGPHL 220
           PPGAGGPHL
Sbjct: 212 PPGAGGPHL 220



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,339,283
Number of extensions: 210072
Number of successful extensions: 297
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)