BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0916300 Os01g0916300|AK063922
(498 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0916300 Similar to PQBP-1 protein (Nuclear protein con... 894 0.0
>Os01g0916300 Similar to PQBP-1 protein (Nuclear protein containing a WW domain)
(Npw38) (JM26 protein)
Length = 498
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/498 (89%), Positives = 444/498 (89%)
Query: 1 MDNSHEQXXXXXXXXXXXXXSIHPAKFQPNPQPTMPFPNMDAGGAQSNQTAHEVSNHNDS 60
MDNSHEQ SIHPAKFQPNPQPTMPFPNMDAGGAQSNQTAHEVSNHNDS
Sbjct: 1 MDNSHEQPLPPGVGAWPPPPSIHPAKFQPNPQPTMPFPNMDAGGAQSNQTAHEVSNHNDS 60
Query: 61 AADIESAVQEAVLREQDIETQQVIQNQRQAKATIEPTQYGEDLLSNRRNPNALKEHLLKM 120
AADIESAVQEAVLREQDIETQQVIQNQRQAKATIEPTQYGEDLLSNRRNPNALKEHLLKM
Sbjct: 61 AADIESAVQEAVLREQDIETQQVIQNQRQAKATIEPTQYGEDLLSNRRNPNALKEHLLKM 120
Query: 121 TAEHRAEMANKRGKPLHADNGNVEIXXXXXXXXXXXXXXXNMSSGQMNXXXXXXXXXXXX 180
TAEHRAEMANKRGKPLHADNGNVEI NMSSGQMN
Sbjct: 121 TAEHRAEMANKRGKPLHADNGNVEIGNGYGVPGGGAYYAANMSSGQMNKPKDIADKAKGA 180
Query: 181 XXLPEFLRQRLRARGILKDEATNNRFTIKQNVDSPVGQIKAAQELPPGWVEAKDPTSGAS 240
LPEFLRQRLRARGILKDEATNNRFTIKQNVDSPVGQIKAAQELPPGWVEAKDPTSGAS
Sbjct: 181 DDLPEFLRQRLRARGILKDEATNNRFTIKQNVDSPVGQIKAAQELPPGWVEAKDPTSGAS 240
Query: 241 YFYNQSTGTTQWDRPGAPLNTMQHQAPPSSSLPENWEEALDQSTGQKYYYNTNTQATQWE 300
YFYNQSTGTTQWDRPGAPLNTMQHQAPPSSSLPENWEEALDQSTGQKYYYNTNTQATQWE
Sbjct: 241 YFYNQSTGTTQWDRPGAPLNTMQHQAPPSSSLPENWEEALDQSTGQKYYYNTNTQATQWE 300
Query: 301 PPTAVNPGVAPHAPTNAAVEMAAQNTDIWNSQMQRXXXXXXXXXXXXQPWGYCNHCTRVQ 360
PPTAVNPGVAPHAPTNAAVEMAAQNTDIWNSQMQR QPWGYCNHCTRVQ
Sbjct: 301 PPTAVNPGVAPHAPTNAAVEMAAQNTDIWNSQMQRCLGCGGWGVGLVQPWGYCNHCTRVQ 360
Query: 361 NLPFQQYPSYPNNTTHSSSNKNPGNVAAKDRSSAKPPFGKANRKDHRKRNRPEDDELDPM 420
NLPFQQYPSYPNNTTHSSSNKNPGNVAAKDRSSAKPPFGKANRKDHRKRNRPEDDELDPM
Sbjct: 361 NLPFQQYPSYPNNTTHSSSNKNPGNVAAKDRSSAKPPFGKANRKDHRKRNRPEDDELDPM 420
Query: 421 DPSSYSDAPRGGWVVGLKGVQPRAADTTAAGPLFQQRPYPSPGAVLRKNAEVASHGKKRG 480
DPSSYSDAPRGGWVVGLKGVQPRAADTTAAGPLFQQRPYPSPGAVLRKNAEVASHGKKRG
Sbjct: 421 DPSSYSDAPRGGWVVGLKGVQPRAADTTAAGPLFQQRPYPSPGAVLRKNAEVASHGKKRG 480
Query: 481 MAPITKRGDGSDGLGEAD 498
MAPITKRGDGSDGLGEAD
Sbjct: 481 MAPITKRGDGSDGLGEAD 498
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.126 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,437,261
Number of extensions: 757399
Number of successful extensions: 2338
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2336
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 393
Effective length of database: 11,553,331
Effective search space: 4540459083
Effective search space used: 4540459083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)