BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0915900 Os01g0915900|J100024O13
         (281 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0915900  Conserved hypothetical protein                      120   1e-27

>Os01g0915900 Conserved hypothetical protein
          Length = 281

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 84/216 (38%)

Query: 1   MSSWNSPYYDTXXXXXXXXXXXXXXXXXXXXXXXXXDKKETKTKDYQSYTSXXXXXXXXX 60
           MSSWNSPYYDT                         DKKETKTKDYQSYTS         
Sbjct: 1   MSSWNSPYYDTSSYGAGSGGGGGGGRRSSSPPRGAGDKKETKTKDYQSYTSNNNNNGSDD 60

Query: 61  XXXXXXXXITSSHKHKDDEKDRNNHSKDSHGGGNSSNYNKDXXXXXXXXXXXXXXXXXXX 120
                   ITSSHKHKDDEKDRNNHSKDSHGGGNSSNYNKD                   
Sbjct: 61  DKDKNKHKITSSHKHKDDEKDRNNHSKDSHGGGNSSNYNKDSYGGNSGNPNNYYGSSTGV 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKDXXXXXXXXXXXXXXXXXXXXXXXXPHNNFX 180
                                       KD                        PHNNF 
Sbjct: 121 VAGSGSYYGGGGGYGGGNTSYGGSLSYGKDGGYGGSNSPYGGGSSIIISGAAPIPHNNFG 180

Query: 181 XXXXXXXXXXXXXXXXXXAAPVFIRAEEVKVIYHHT 216
                             AAPVFIRAEEVKVIYHHT
Sbjct: 181 GGGTGWPVPPPPQDGGSGAAPVFIRAEEVKVIYHHT 216



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.128    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,999,246
Number of extensions: 65953
Number of successful extensions: 226
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 181
Effective length of database: 11,814,401
Effective search space: 2138406581
Effective search space used: 2138406581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 155 (64.3 bits)