BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0911800 Os01g0911800|AK065451
         (760 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0911800  Similar to Heavy meromyosin-like protein (Frag...  1288   0.0  

>Os01g0911800 Similar to Heavy meromyosin-like protein (Fragment)
          Length = 760

 Score = 1288 bits (3334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/739 (87%), Positives = 645/739 (87%)

Query: 22  RKKDLHAGKKLLAEYRXXXXXXXXXXXXXXXXXXXPVPDTLENPPPNATSTNSGDKLXXX 81
           RKKDLHAGKKLLAEYR                   PVPDTLENPPPNATSTNSGDKL   
Sbjct: 22  RKKDLHAGKKLLAEYRKKKNKAAKKAAETADQATAPVPDTLENPPPNATSTNSGDKLVSD 81

Query: 82  XXXXXXXXXXXXXXYENGPTSYSRGDEPLXXXXXXXXXXXXXXXXXXXHDVSSVGGSKIY 141
                         YENGPTSYSRGDEPL                   HDVSSVGGSKIY
Sbjct: 82  VDVNTTSTSSVPPVYENGPTSYSRGDEPLSNGPAPVNVPVSVSNPAPSHDVSSVGGSKIY 141

Query: 142 GNLSFSDLVNGHNEDWRGDAARKREEHSPDKDVTLKSKLSAFGNSDEVSHSSDEVLLSQG 201
           GNLSFSDLVNGHNEDWRGDAARKREEHSPDKDVTLKSKLSAFGNSDEVSHSSDEVLLSQG
Sbjct: 142 GNLSFSDLVNGHNEDWRGDAARKREEHSPDKDVTLKSKLSAFGNSDEVSHSSDEVLLSQG 201

Query: 202 RNPVLREVSDTEQXXXXXXXXLFGKLEGTQSQGYSANNDIFGRFRATSKDSSQADGLAYA 261
           RNPVLREVSDTEQ        LFGKLEGTQSQGYSANNDIFGRFRATSKDSSQADGLAYA
Sbjct: 202 RNPVLREVSDTEQSSSYSSGSLFGKLEGTQSQGYSANNDIFGRFRATSKDSSQADGLAYA 261

Query: 262 SSREYGSAFNNSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRPSFLDSIGVQRAPTTEVP 321
           SSREYGSAFNNSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRPSFLDSIGVQRAPTTEVP
Sbjct: 262 SSREYGSAFNNSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRPSFLDSIGVQRAPTTEVP 321

Query: 322 YVEPAKASKPFGNSNSESSFFQPPNQQSAGSNDVDGSLKSGRQEYNNEKGSYGNSIRTDS 381
           YVEPAKASKPFGNSNSESSFFQPPNQQSAGSNDVDGSLKSGRQEYNNEKGSYGNSIRTDS
Sbjct: 322 YVEPAKASKPFGNSNSESSFFQPPNQQSAGSNDVDGSLKSGRQEYNNEKGSYGNSIRTDS 381

Query: 382 FPSKDERNLHHSTQMFQNFTIPGKDDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLA 441
           FPSKDERNLHHSTQMFQNFTIPGKDDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLA
Sbjct: 382 FPSKDERNLHHSTQMFQNFTIPGKDDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLA 441

Query: 442 TDNSALTDKFNQQAQVISNLTSDMERLQNEIQAQLLALESVRTEYANAQLECNAADERAK 501
           TDNSALTDKFNQQAQVISNLTSDMERLQNEIQAQLLALESVRTEYANAQLECNAADERAK
Sbjct: 442 TDNSALTDKFNQQAQVISNLTSDMERLQNEIQAQLLALESVRTEYANAQLECNAADERAK 501

Query: 502 VLAAEVILLEDKALRLRSSELKLEKEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQE 561
           VLAAEVILLEDKALRLRSSELKLEKEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQE
Sbjct: 502 VLAAEVILLEDKALRLRSSELKLEKEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQE 561

Query: 562 EKKLLHSKLRNTSVTEKVNIIEKPSADKRDASTAXXXXXXXXXXXXXXXXXAIDTVEDGE 621
           EKKLLHSKLRNTSVTEKVNIIEKPSADKRDASTA                 AIDTVEDGE
Sbjct: 562 EKKLLHSKLRNTSVTEKVNIIEKPSADKRDASTATEDLDTGESSSSETLTSAIDTVEDGE 621

Query: 622 TSVSRSNNVADFTYLEEVSSSIPHDQLRMIDNINSLMSXXXXXXXXXXXXXXIESSNCSK 681
           TSVSRSNNVADFTYLEEVSSSIPHDQLRMIDNINSLMS              IESSNCSK
Sbjct: 622 TSVSRSNNVADFTYLEEVSSSIPHDQLRMIDNINSLMSELAVEREELLRALRIESSNCSK 681

Query: 682 LKELNKDLTQKLEIQTHRLELLSSQRMANENVLPKPIDTRSINDATLYADEGDEVVERVL 741
           LKELNKDLTQKLEIQTHRLELLSSQRMANENVLPKPIDTRSINDATLYADEGDEVVERVL
Sbjct: 682 LKELNKDLTQKLEIQTHRLELLSSQRMANENVLPKPIDTRSINDATLYADEGDEVVERVL 741

Query: 742 GWIMKLFPGGPKRRTSKLL 760
           GWIMKLFPGGPKRRTSKLL
Sbjct: 742 GWIMKLFPGGPKRRTSKLL 760



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.125    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,660,554
Number of extensions: 776414
Number of successful extensions: 2793
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2790
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 652
Effective length of database: 11,396,689
Effective search space: 7430641228
Effective search space used: 7430641228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 160 (66.2 bits)