BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0911200 Os01g0911200|AK101333
         (698 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0911200  Ribophorin II family protein                       1280   0.0  

>Os01g0911200 Ribophorin II family protein
          Length = 698

 Score = 1280 bits (3313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/698 (92%), Positives = 646/698 (92%)

Query: 1   MAAAGGLPXXXXXXXXXXXXXXXXXXXXXXXXXXDAHRSAAAELFAASPDGSFGDLETTY 60
           MAAAGGLP                          DAHRSAAAELFAASPDGSFGDLETTY
Sbjct: 1   MAAAGGLPASATLLLLVIAAVAVAPLASAVRPVSDAHRSAAAELFAASPDGSFGDLETTY 60

Query: 61  EAVRTFQILGVEKDKGLIGKACKFAAEKLASSSSSPAKDLFHAARISGVLKCSVDSGVYD 120
           EAVRTFQILGVEKDKGLIGKACKFAAEKLASSSSSPAKDLFHAARISGVLKCSVDSGVYD
Sbjct: 61  EAVRTFQILGVEKDKGLIGKACKFAAEKLASSSSSPAKDLFHAARISGVLKCSVDSGVYD 120

Query: 121 DVATRLKAVIKDTNSLLELYYSVGGLLSIKEQGHNVVLPDADNTFHAIKALSQSDGRWRY 180
           DVATRLKAVIKDTNSLLELYYSVGGLLSIKEQGHNVVLPDADNTFHAIKALSQSDGRWRY
Sbjct: 121 DVATRLKAVIKDTNSLLELYYSVGGLLSIKEQGHNVVLPDADNTFHAIKALSQSDGRWRY 180

Query: 181 DTNSAESSTFAAGIALEALSAVISLADSEVDSSMIAVVKNDIVKLFDTIKSYDDGTFYFD 240
           DTNSAESSTFAAGIALEALSAVISLADSEVDSSMIAVVKNDIVKLFDTIKSYDDGTFYFD
Sbjct: 181 DTNSAESSTFAAGIALEALSAVISLADSEVDSSMIAVVKNDIVKLFDTIKSYDDGTFYFD 240

Query: 241 EKHVDAAEYKGPITTSASVVRGVTSFAAVASGKLNIPGEKILGLAKFFLGIGLPGSAKDC 300
           EKHVDAAEYKGPITTSASVVRGVTSFAAVASGKLNIPGEKILGLAKFFLGIGLPGSAKDC
Sbjct: 241 EKHVDAAEYKGPITTSASVVRGVTSFAAVASGKLNIPGEKILGLAKFFLGIGLPGSAKDC 300

Query: 301 FNQIESLSFLENNRVFVPLVLSLPSKVFSLTSKDQLKVEVTTVFGSAAPPLRVNLVQVLG 360
           FNQIESLSFLENNRVFVPLVLSLPSKVFSLTSKDQLKVEVTTVFGSAAPPLRVNLVQVLG
Sbjct: 301 FNQIESLSFLENNRVFVPLVLSLPSKVFSLTSKDQLKVEVTTVFGSAAPPLRVNLVQVLG 360

Query: 361 SDSKVITTETKELQFDLDNNVHYLDIAPLKIDVGKYSLVFEISLQEQEHETIYATGGTNT 420
           SDSKVITTETKELQFDLDNNVHYLDIAPLKIDVGKYSLVFEISLQEQEHETIYATGGTNT
Sbjct: 361 SDSKVITTETKELQFDLDNNVHYLDIAPLKIDVGKYSLVFEISLQEQEHETIYATGGTNT 420

Query: 421 EAIFVTGLIKVDKAEIGISDNDAGTVESVQKIDLQKDTSVSLSANHLQKLRLSFQLSTPL 480
           EAIFVTGLIKVDKAEIGISDNDAGTVESVQKIDLQKDTSVSLSANHLQKLRLSFQLSTPL
Sbjct: 421 EAIFVTGLIKVDKAEIGISDNDAGTVESVQKIDLQKDTSVSLSANHLQKLRLSFQLSTPL 480

Query: 481 GKTFKPHQVFLKLKHDESKVEHLFVVPGSARQFKIVLDFLGLVEKFYYLSGRYDLELAVG 540
           GKTFKPHQVFLKLKHDESKVEHLFVVPGSARQFKIVLDFLGLVEKFYYLSGRYDLELAVG
Sbjct: 481 GKTFKPHQVFLKLKHDESKVEHLFVVPGSARQFKIVLDFLGLVEKFYYLSGRYDLELAVG 540

Query: 541 DAAMENSFLRALGHIELDLXXXXXXXXXXXXQAVDPFSKFGPKKEISHIFRSPEKRPPKE 600
           DAAMENSFLRALGHIELDL            QAVDPFSKFGPKKEISHIFRSPEKRPPKE
Sbjct: 541 DAAMENSFLRALGHIELDLPEAPEKAPKPPAQAVDPFSKFGPKKEISHIFRSPEKRPPKE 600

Query: 601 LSFAFTGLTLLPIVGFLIGLMRLGVNLKNXXXXXXXXXXXXXXHAGIGAVLLLYVLFWIK 660
           LSFAFTGLTLLPIVGFLIGLMRLGVNLKN              HAGIGAVLLLYVLFWIK
Sbjct: 601 LSFAFTGLTLLPIVGFLIGLMRLGVNLKNFPSLPAPAAFASLFHAGIGAVLLLYVLFWIK 660

Query: 661 LDLFTTLKYLSFLGVFLVFVGHRALSYLSSTSAKQKTA 698
           LDLFTTLKYLSFLGVFLVFVGHRALSYLSSTSAKQKTA
Sbjct: 661 LDLFTTLKYLSFLGVFLVFVGHRALSYLSSTSAKQKTA 698



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,647,796
Number of extensions: 738684
Number of successful extensions: 1600
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1600
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 590
Effective length of database: 11,396,689
Effective search space: 6724046510
Effective search space used: 6724046510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)